Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   V6U70_RS07160 Genome accession   NZ_CP145868
Coordinates   1588432..1589361 (-) Length   309 a.a.
NCBI ID   WP_002884751.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1583432..1594361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS07135 (V6U70_07130) - 1584717..1585535 (-) 819 WP_410532294.1 Cof-type HAD-IIB family hydrolase -
  V6U70_RS07140 (V6U70_07135) - 1585528..1586322 (-) 795 WP_002884689.1 HAD-IIB family hydrolase -
  V6U70_RS07145 (V6U70_07140) - 1586504..1586881 (+) 378 WP_002884206.1 GntR family transcriptional regulator -
  V6U70_RS07150 (V6U70_07145) - 1586886..1587584 (+) 699 WP_002884466.1 ABC transporter ATP-binding protein -
  V6U70_RS07155 (V6U70_07150) - 1587596..1588381 (+) 786 WP_002884628.1 hypothetical protein -
  V6U70_RS07160 (V6U70_07155) amiF 1588432..1589361 (-) 930 WP_002884751.1 ATP-binding cassette domain-containing protein Regulator
  V6U70_RS07165 (V6U70_07160) amiE 1589354..1590439 (-) 1086 WP_410532295.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS07170 (V6U70_07165) amiD 1590449..1591375 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U70_RS07175 (V6U70_07170) amiC 1591375..1592868 (-) 1494 WP_022496730.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35020.08 Da        Isoelectric Point: 6.5822

>NTDB_id=940853 V6U70_RS07160 WP_002884751.1 1588432..1589361(-) (amiF) [Streptococcus salivarius strain KSS12]
MPEKLVEVKDVEISFGEGSKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGHLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLHNFHLYKDEEDRKAKIKEIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVELRPGHFVWGNKAEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=940853 V6U70_RS07160 WP_002884751.1 1588432..1589361(-) (amiF) [Streptococcus salivarius strain KSS12]
ATGCCTGAGAAGTTAGTTGAAGTAAAAGATGTGGAGATTTCCTTCGGTGAAGGAAGCAAGAAATTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTTTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACCACTATCGGGCGTG
CCATTATTGGTCTAAATGATACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAAATCAATGGACACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCAACAGTTGA
TTATATCTTGTCTGAGGGCTTGCATAACTTCCATCTCTATAAGGATGAGGAAGATCGTAAAGCTAAAATCAAGGAAATCA
TCAAAGAAGTGGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGT
ATTGCGCGTTCCTTGGTTATGCAACCTGACTTGGTCATCGCTGACGAACCAATCTCAGCCCTTGACGTGTCAGTCCGTGC
CCAAGTTTTGAACCTGCTTAAGAAATTCCAAAAAGAGTTGGGATTGACCTATCTCTTTATCGCTCACGACTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATTTACAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAACTCTACAAC
AATCCTATCCACCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGACCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACATGACTATTCTGTTGATAAACCAGAAATGGTTGAACTACGTCCAGGACACTTCGTTT
GGGGTAACAAAGCCGAAATCGAGACTTATCGTAAAGAACAAAGTAAATAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(26-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

99.353

100

0.994
  amiF Streptococcus thermophilus LMG 18311

98.058

100

0.981
  amiF Streptococcus thermophilus LMD-9

97.735

100

0.977