Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ABUS34_RS14900 Genome accession   NZ_CP169801
Coordinates   3066174..3067562 (+) Length   462 a.a.
NCBI ID   WP_000048860.1    Uniprot ID   A0A059ZI65
Organism   Acinetobacter baumannii strain Hv782     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3061174..3072562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS34_RS14880 dapF 3061789..3062634 (-) 846 WP_000923484.1 diaminopimelate epimerase -
  ABUS34_RS14885 lysA 3062640..3063890 (-) 1251 WP_000011147.1 diaminopimelate decarboxylase -
  ABUS34_RS14890 - 3063913..3064137 (-) 225 WP_031961116.1 lipoprotein -
  ABUS34_RS14895 - 3064278..3065684 (-) 1407 WP_000070815.1 amino acid permease -
  ABUS34_RS14900 radA/sms 3066174..3067562 (+) 1389 WP_000048860.1 DNA repair protein RadA Machinery gene
  ABUS34_RS14905 - 3067645..3068622 (+) 978 WP_031961117.1 Tim44 domain-containing protein -
  ABUS34_RS14910 epmA 3068681..3069655 (-) 975 WP_021511088.1 EF-P lysine aminoacylase EpmA -
  ABUS34_RS14915 - 3069652..3070719 (-) 1068 WP_031961119.1 4-phosphoerythronate dehydrogenase -
  ABUS34_RS14920 - 3070824..3071216 (-) 393 WP_000119200.1 YkvA family protein -
  ABUS34_RS14925 fdhD 3071336..3072127 (-) 792 WP_031961121.1 formate dehydrogenase accessory sulfurtransferase FdhD -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49728.19 Da        Isoelectric Point: 7.4015

>NTDB_id=940856 ABUS34_RS14900 WP_000048860.1 3066174..3067562(+) (radA/sms) [Acinetobacter baumannii strain Hv782]
MSKVKTVYRCEQCGADHLKWAGQCSECGEWNCLNEVKLEPTTAHRARPKVGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=940856 ABUS34_RS14900 WP_000048860.1 3066174..3067562(+) (radA/sms) [Acinetobacter baumannii strain Hv782]
ATGAGCAAAGTCAAAACCGTTTACCGTTGCGAGCAATGTGGTGCCGATCATCTAAAATGGGCAGGTCAATGTTCAGAGTG
TGGTGAATGGAATTGTCTTAATGAAGTCAAACTAGAACCCACCACTGCTCATCGTGCACGTCCTAAAGTTGGGGGTTATG
CGGGTCAAGTCGCCAATATTACAACGCTTAATAAAGTCTCTGTTTCTCATGAAACCCGTTTACCAACAGGCATTAGCGAA
TTTGACCGTGTGCTTGGTGGTGGCTTGGTGACAGGTTCTGTAGTACTCATTGGTGGTGACCCGGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACTCACATGGCAAGTGCAAAAAGTTCTGCGCTTTATATTACGGGTGAGGAATCGCTGTCAC
AGGTTGCCTTACGCGCCCAACGTCTTGACCTACCAACAGACCAGTTAAAAGTCATGGCTGAAACTTGTGTCGAACGCATT
TGTGAAGTTTTAGAACAAGAACGTCCTGTTGTCGCAATTTTGGACTCTATCCAAACGCTTTACACAGAAACGCTTCAATC
TGCGCCGGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGTTATGCAAAAAATAGTGGCACAGCGCTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCATTGGCAGGTCCTCGTGTTTTAGAACACATGGTGGACTGCGTACTTTAC
TTTGAAGGCCAATCAGACTCACGTTATCGAATGATTCGTGCAGTGAAAAACCGTTTTGGTGCAGTCAATGAGCTTGGCGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATCTTTTTAAGTCGTTATGATGAAGCCATTC
CTGGTTCAATTGTCATGATTAGCCGTGAAGGAACTCGCCCGCTTTTAGTTGAAGTTCAGGCTTTAGTCGATGATGCTCAA
GGACAACCGAGACGTGTTGCACTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTTATGCATCGTCATGGTGG
TGTACAAACCACCGGACAAGATGTGTATGTCAATATTGTAGGTGGTTTAAAAATTACCGAAACAGGTTCGGACTTGGCTG
TTTTACTTGCATGTGCTTCGAGTTTGCGAACAAAAGCCTTACCTCAGCAGCTTGCAGTTTTTGGTGAAGTTGGGCTCTCA
GGTGAAATCCGCCCTGTACCTAATGGTCAGGAACGTTTAAAAGAAGCAGCAAAACATGGGTTTAAATACGTCATTTTACC
AAGAGGTAATGCCCCGCAAAAAGCAATTCCGGGCGTACAAGTGATTGCTGTTGCCCGCCTGCATGAAGCCTTGACTGAGG
CGATGCAACTTAGTGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A059ZI65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.171

98.918

0.457
  radA Streptococcus mitis NCTC 12261

43.043

99.567

0.429
  radA Streptococcus pneumoniae D39

42.67

98.918

0.422
  radA Streptococcus pneumoniae TIGR4

42.67

98.918

0.422
  radA Streptococcus mitis SK321

42.67

98.918

0.422
  radA Streptococcus pneumoniae R6

42.67

98.918

0.422
  radA Streptococcus pneumoniae Rx1

42.67

98.918

0.422