Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U70_RS07185 Genome accession   NZ_CP145868
Coordinates   1595081..1597051 (-) Length   656 a.a.
NCBI ID   WP_037611823.1    Uniprot ID   A0AB33ZAL0
Organism   Streptococcus salivarius strain KSS12     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1590081..1602051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS07170 (V6U70_07165) amiD 1590449..1591375 (-) 927 WP_022496729.1 oligopeptide ABC transporter permease OppC Regulator
  V6U70_RS07175 (V6U70_07170) amiC 1591375..1592868 (-) 1494 WP_022496730.1 ABC transporter permease Regulator
  V6U70_RS07180 (V6U70_07175) amiA 1592929..1594899 (-) 1971 WP_022496731.1 peptide ABC transporter substrate-binding protein Regulator
  V6U70_RS07185 (V6U70_07180) amiA 1595081..1597051 (-) 1971 WP_037611823.1 peptide ABC transporter substrate-binding protein Regulator
  V6U70_RS07190 (V6U70_07185) pta 1597287..1598270 (-) 984 WP_371482510.1 phosphate acetyltransferase -
  V6U70_RS07195 (V6U70_07190) - 1598284..1599180 (-) 897 WP_049554141.1 RluA family pseudouridine synthase -
  V6U70_RS07200 (V6U70_07195) - 1599177..1600013 (-) 837 WP_002884507.1 NAD kinase -
  V6U70_RS07205 (V6U70_07200) - 1599985..1600659 (-) 675 WP_049554140.1 GTP pyrophosphokinase family protein -
  V6U70_RS07210 (V6U70_07205) - 1600755..1601330 (+) 576 WP_002886838.1 CYTH domain-containing protein -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 71984.79 Da        Isoelectric Point: 4.9178

>NTDB_id=940858 V6U70_RS07185 WP_037611823.1 1595081..1597051(-) (amiA) [Streptococcus salivarius strain KSS12]
MKKSKWLALAGVALLSVGALAACSSKSSTSGTTYGYVYNSDPESLDYITSNTGPTKTAVTNGVDGLMEADKYGNLVPSVA
EDWSVSQDGLTYTYKIRKGIKWYTSDGEEYADVTAKDFVTGLKHAADGKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKPEPYWNSKTTYGLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDAIKLSYYDGSDQEALERGFTDGAYSLARVYPTSSNYSSVEKKYKDNIYYTAPGASTSAIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQMNGKDGAALALRNLFVPSDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
TDGQDGLYNAEKAKTEFAKAKEALQGEGVQFPIHLDLPVDQSSKIHVAQAQSLKQTIEQSLGSDNVVIDVNQLSSDDMQN
ATLNAANAAAEDWDISNGVVWGPDYQDPSTYLDIFKTTSSENTKTFMGYDDPNNAAAAQVGLKDYDALLDSAASETTDLN
ARYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLTPFTGASMQVGDKNSSDYFKYVKPQEKVVTKKEYEQSREKWLKEK
KASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940858 V6U70_RS07185 WP_037611823.1 1595081..1597051(-) (amiA) [Streptococcus salivarius strain KSS12]
ATGAAAAAAAGCAAATGGTTAGCCCTTGCGGGTGTGGCACTCCTCAGTGTAGGTGCCTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATGGTTATGTTTATAATTCAGATCCAGAATCATTGGATTACATCACTTCAAATACAGGAC
CTACTAAGACAGCTGTGACAAACGGTGTAGATGGTCTTATGGAAGCAGATAAATATGGAAATCTTGTCCCTTCAGTAGCT
GAAGATTGGTCTGTCTCTCAAGATGGTCTGACTTATACTTATAAAATCCGTAAGGGAATTAAATGGTATACTTCTGATGG
TGAAGAGTATGCTGATGTGACTGCTAAGGACTTTGTGACTGGTCTTAAGCATGCGGCTGATGGCAAGTCTGGAGCTCTTT
ACTTGGTGCAAGATTCTATTGCTGGCTTGTCTGACTACCTCTCTGGTGCCAATAAAGATTTCTCAAATGTAGGCGTTAAA
GCAATCGACGATTATACATTGCAATACACCCTTAAAAAACCTGAGCCATACTGGAACTCTAAAACAACTTATGGCTTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGAAAAGATTTTGGTAAGTCAACAGACCCAACATCTATCCTCTATA
ATGGTCCTTTCCTTCTCAAATCTTTGACAGCTAAATCATCTATTGAGTTGACTAAGAATGAAAATTATTGGGACAAGAAG
AATGTACACTTTGATGCCATCAAATTGTCATATTATGACGGTTCGGATCAAGAGGCTCTAGAACGTGGTTTCACGGATGG
TGCCTATAGTTTGGCTCGTGTCTACCCAACGAGTTCTAACTATTCTTCTGTAGAGAAGAAATATAAAGATAACATTTATT
ACACTGCACCAGGTGCGTCTACATCAGCCATTGGTGTTAATATCGACCGCCAAAGCTATAAATTCTCAGCCAAGAAGACG
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTCCGTCAATCAATCAACTTCGCAATTGATCGTAC
GGCTTATCAATCACAAATGAATGGTAAAGATGGTGCAGCTCTAGCTCTTCGTAACCTTTTTGTTCCTTCTGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGAGATCTTGTAACAGAGAAAATGTCCTCTTATGGTGATGAATGGTCAGGTGTCAACTTT
ACTGATGGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGAAGCTCTCCAAGGAGA
AGGTGTTCAATTCCCAATTCACTTGGACCTTCCAGTTGACCAAAGTTCTAAAATCCATGTTGCTCAGGCCCAATCTTTGA
AACAAACCATTGAACAATCATTGGGTAGCGATAATGTGGTTATCGATGTTAACCAATTGTCATCAGATGATATGCAAAAT
GCAACCCTTAATGCGGCAAATGCGGCAGCAGAAGACTGGGATATTTCAAACGGTGTGGTTTGGGGTCCAGACTATCAAGA
TCCATCAACTTACCTTGATATCTTTAAGACAACTTCAAGTGAAAATACCAAGACTTTCATGGGTTATGATGATCCAAACA
ATGCGGCCGCAGCTCAAGTAGGTCTTAAAGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACCTCAAC
GCTCGTTACGACCGCTATGCCCAAGCTCAAGCATGGTTGGAAGATAGCTCGCTTGTCATTCCATTGACTGTTGGTAACGG
TGCAGCACCAGTTATCTCACGCTTGACACCATTTACGGGTGCTAGCATGCAAGTGGGTGATAAGAACTCATCAGACTACT
TCAAATACGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

98.628

100

0.986
  amiA3 Streptococcus thermophilus LMG 18311

90.411

100

0.905
  amiA3 Streptococcus thermophilus LMD-9

90.259

100

0.904