Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6U70_RS01370 Genome accession   NZ_CP145868
Coordinates   254192..255091 (+) Length   299 a.a.
NCBI ID   WP_048790671.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 249192..260091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS01350 (V6U70_01350) trkA 250357..251706 (-) 1350 WP_048790668.1 Trk system potassium transporter TrkA -
  V6U70_RS01355 (V6U70_01355) - 251984..252493 (+) 510 WP_048790669.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U70_RS01360 (V6U70_01360) - 252804..253361 (+) 558 WP_037598980.1 ECF transporter S component -
  V6U70_RS01365 (V6U70_01365) - 253364..254014 (+) 651 WP_410532570.1 phosphatase PAP2 family protein -
  V6U70_RS01370 (V6U70_01370) comR 254192..255091 (+) 900 WP_048790671.1 helix-turn-helix transcriptional regulator Regulator
  V6U70_RS01375 (V6U70_01375) comA 255257..257353 (+) 2097 WP_410532572.1 peptide cleavage/export ABC transporter Regulator
  V6U70_RS01380 (V6U70_01380) - 257464..257796 (+) 333 WP_060972183.1 DUF805 domain-containing protein -
  V6U70_RS01385 (V6U70_01385) - 257847..259241 (-) 1395 WP_410532574.1 DUF4153 domain-containing protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35287.64 Da        Isoelectric Point: 5.1269

>NTDB_id=940826 V6U70_RS01370 WP_048790671.1 254192..255091(+) (comR) [Streptococcus salivarius strain KSS12]
MNIKDSIGIRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMTDLLDHDRIEIPDTYYE
MKNRLIKYPSYGDKERVKQKLELIEEVYENFFDILPEEELLTLDILENILSFTSWEESPKVEEIYEDLFEQVKKKKKFST
NDLLVIDYYLYHLYGRKQYDKKLFDRIVDRVLRQEIPTDDAYNIALFNDLMAIAALKIFHKSFSDFLVVVDKALAVIEKS
QFHSYKPGVYILEAKYELLHKQNKKKAAENYDKAIMFASVLEDSVLEEKIREEKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940826 V6U70_RS01370 WP_048790671.1 254192..255091(+) (comR) [Streptococcus salivarius strain KSS12]
TTGAACATAAAAGACAGCATTGGAATAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGCATTGAAAAAGGGGAGTCGCTCCCGTCTTTGGATAAATTATCTT
ATATTGCAAAACGTCTAGGAAAAAATATGACCGATTTATTGGATCATGACAGAATTGAGATTCCTGACACATACTATGAG
ATGAAAAATCGATTAATAAAGTATCCTTCCTATGGAGATAAGGAGAGAGTGAAACAAAAACTGGAACTTATCGAAGAAGT
GTATGAGAATTTTTTTGATATTCTTCCAGAAGAAGAATTATTAACTTTAGATATTTTGGAAAATATACTGAGTTTCACTA
GCTGGGAGGAGAGTCCCAAGGTTGAAGAAATATATGAGGATTTATTCGAACAGGTCAAAAAGAAGAAGAAATTTTCAACT
AATGATTTATTAGTTATTGATTATTATCTCTATCATCTTTATGGAAGAAAGCAGTATGATAAAAAACTCTTTGATAGAAT
TGTTGATAGAGTCTTGAGACAGGAAATCCCGACAGATGATGCCTACAATATTGCTTTATTTAATGATTTGATGGCTATTG
CTGCTTTAAAGATTTTTCATAAGTCCTTCTCAGATTTTTTAGTAGTTGTAGATAAAGCTTTGGCTGTTATAGAGAAATCA
CAGTTTCATAGTTATAAACCAGGTGTCTATATTTTAGAGGCTAAATATGAACTTCTGCATAAACAAAACAAGAAAAAAGC
TGCAGAGAATTATGATAAGGCTATAATGTTCGCCTCTGTTTTAGAAGATTCGGTTTTGGAAGAAAAAATTAGGGAAGAGA
AAGCAGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

86.957

100

0.87
  comR Streptococcus salivarius SK126

86.957

100

0.87
  comR Streptococcus thermophilus LMG 18311

85.284

100

0.853
  comR Streptococcus thermophilus LMD-9

84.615

100

0.846
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

44.147

100

0.441
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

43.478

100

0.435