Detailed information NTG0940608

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: V6U66_RS09920
• Genome accession: NZ_CP145864
• Coordinates: 2109355..2109792 (-)
• Length: 145 a.a.
• NCBI ID: WP_410534501.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS7
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2104355..2114792

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6U66_RS09885 (V6U66_09865)	-	2104394..2105056 (-)	663	WP_221739286.1	CPBP family intramembrane glutamic endopeptidase	-
V6U66_RS09890 (V6U66_09870)	-	2105169..2105615 (-)	447	WP_045001368.1	hypothetical protein	-
V6U66_RS09895 (V6U66_09875)	-	2105693..2106349 (-)	657	WP_014632546.1	CPBP family intramembrane glutamic endopeptidase	-
V6U66_RS09900 (V6U66_09880)	-	2106361..2106558 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
V6U66_RS09905 (V6U66_09885)	-	2106809..2108002 (-)	1194	WP_002885831.1	acetate kinase	-
V6U66_RS09910 (V6U66_09890)	comYH	2108059..2109015 (-)	957	WP_014632544.1	class I SAM-dependent methyltransferase	Machinery gene
V6U66_RS09915 (V6U66_09895)	comGG	2109060..2109377 (-)	318	WP_045001363.1	competence type IV pilus minor pilin ComGG	-
V6U66_RS09920 (V6U66_09900)	comYF	2109355..2109792 (-)	438	WP_410534501.1	competence type IV pilus minor pilin ComGF	Machinery gene
V6U66_RS09925 (V6U66_09905)	comGE	2109779..2110009 (-)	231	WP_013991265.1	competence type IV pilus minor pilin ComGE	-
V6U66_RS09930 (V6U66_09910)	comYD	2110041..2110469 (-)	429	WP_014632541.1	competence type IV pilus minor pilin ComGD	Machinery gene
V6U66_RS09935 (V6U66_09915)	comYC	2110429..2110755 (-)	327	WP_070576715.1	competence type IV pilus major pilin ComGC	Machinery gene
V6U66_RS09940 (V6U66_09920)	comYB	2110752..2111852 (-)	1101	WP_155214000.1	competence type IV pilus assembly protein ComGB	Machinery gene
V6U66_RS09945 (V6U66_09925)	comYA	2111734..2112675 (-)	942	WP_155214001.1	competence type IV pilus ATPase ComGA	Machinery gene
V6U66_RS09950 (V6U66_09930)	-	2112755..2113117 (-)	363	WP_002887019.1	DUF1033 family protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16201.70 Da
• Isoelectric Point: 9.0226

>NTDB_id=940608 V6U66_RS09920 WP_410534501.1 2109355..2109792(-) (comYF) [Streptococcus salivarius strain KSS7]
MSLNSKVRAFTLLECLVALLVIAGSVQVYQGLTTVLMSNVKQVKQQESQDWLLFVQQMEAELEGCQLVKVEGNKLYVKQD
NQDLAFGLSSATDFRKTNADGRGYQPMLFNVKASTISQNKQIVTIQVTLKNGLQRSFVYAFEKTG

Nucleotide

• Length: 438 bp

>NTDB_id=940608 V6U66_RS09920 WP_410534501.1 2109355..2109792(-) (comYF) [Streptococcus salivarius strain KSS7]
ATGTCTCTCAATAGTAAGGTTCGCGCCTTTACCCTCTTGGAATGTCTAGTGGCCTTGTTGGTGATTGCTGGTTCAGTTCA
AGTTTATCAAGGTCTGACCACAGTATTGATGAGCAATGTTAAGCAGGTCAAGCAACAAGAAAGCCAAGACTGGCTTCTAT
TTGTTCAACAAATGGAGGCAGAATTAGAAGGTTGTCAGTTGGTAAAGGTAGAGGGGAACAAACTCTATGTCAAGCAGGAT
AATCAAGACTTAGCTTTTGGACTATCAAGTGCTACTGATTTTCGAAAAACAAATGCTGACGGTCGAGGCTACCAACCAAT
GCTTTTTAATGTAAAAGCTAGTACAATTAGCCAAAATAAACAGATAGTCACCATCCAAGTGACGCTTAAAAATGGGCTAC
AAAGGAGTTTTGTTTATGCTTTTGAAAAAACAGGTTAG

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (37-134)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	58.156	97.241	0.566
comYF	Streptococcus mutans UA159	57.447	97.241	0.559
comGF/cglF	Streptococcus pneumoniae D39	49.296	97.931	0.483
comGF/cglF	Streptococcus pneumoniae Rx1	49.296	97.931	0.483
comGF/cglF	Streptococcus pneumoniae R6	49.296	97.931	0.483
comGF/cglF	Streptococcus pneumoniae TIGR4	49.296	97.931	0.483
comGF/cglF	Streptococcus mitis NCTC 12261	46.528	99.31	0.462
comGF/cglF	Streptococcus mitis SK321	46.528	99.31	0.462
comGF	Lactococcus lactis subsp. cremoris KW2	45.324	95.862	0.434