Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   V6U66_RS09910 Genome accession   NZ_CP145864
Coordinates   2108059..2109015 (-) Length   318 a.a.
NCBI ID   WP_014632544.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS7     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103059..2114015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U66_RS09880 (V6U66_09860) proC 2103597..2104367 (+) 771 WP_155164692.1 pyrroline-5-carboxylate reductase -
  V6U66_RS09885 (V6U66_09865) - 2104394..2105056 (-) 663 WP_221739286.1 CPBP family intramembrane glutamic endopeptidase -
  V6U66_RS09890 (V6U66_09870) - 2105169..2105615 (-) 447 WP_045001368.1 hypothetical protein -
  V6U66_RS09895 (V6U66_09875) - 2105693..2106349 (-) 657 WP_014632546.1 CPBP family intramembrane glutamic endopeptidase -
  V6U66_RS09900 (V6U66_09880) - 2106361..2106558 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  V6U66_RS09905 (V6U66_09885) - 2106809..2108002 (-) 1194 WP_002885831.1 acetate kinase -
  V6U66_RS09910 (V6U66_09890) comYH 2108059..2109015 (-) 957 WP_014632544.1 class I SAM-dependent methyltransferase Machinery gene
  V6U66_RS09915 (V6U66_09895) comGG 2109060..2109377 (-) 318 WP_045001363.1 competence type IV pilus minor pilin ComGG -
  V6U66_RS09920 (V6U66_09900) comYF 2109355..2109792 (-) 438 WP_410534501.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6U66_RS09925 (V6U66_09905) comGE 2109779..2110009 (-) 231 WP_013991265.1 competence type IV pilus minor pilin ComGE -
  V6U66_RS09930 (V6U66_09910) comYD 2110041..2110469 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  V6U66_RS09935 (V6U66_09915) comYC 2110429..2110755 (-) 327 WP_070576715.1 competence type IV pilus major pilin ComGC Machinery gene
  V6U66_RS09940 (V6U66_09920) comYB 2110752..2111852 (-) 1101 WP_155214000.1 competence type IV pilus assembly protein ComGB Machinery gene
  V6U66_RS09945 (V6U66_09925) comYA 2111734..2112675 (-) 942 WP_155214001.1 competence type IV pilus ATPase ComGA Machinery gene
  V6U66_RS09950 (V6U66_09930) - 2112755..2113117 (-) 363 WP_002887019.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35773.65 Da        Isoelectric Point: 4.3805

>NTDB_id=940607 V6U66_RS09910 WP_014632544.1 2108059..2109015(-) (comYH) [Streptococcus salivarius strain KSS7]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANEVIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTKDDQLDVLEIGSGTGNLAETLLNNSQKNLNYMGMEVDDLLIDLSASIADVVNSS
AVYIQEDAVRPHILKESDVIISDLPVGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAILLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTENAPETFVYPLSDLQNPEVLKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=940607 V6U66_RS09910 WP_014632544.1 2108059..2109015(-) (comYH) [Streptococcus salivarius strain KSS7]
ATGAATTTTGAAGCAATTGAGACAGCCTTTGAGCTGTTGTTAGAAAATGTCCAAACCATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCCCTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTAGCTAATGAAGTCATCATCAAAAACAACG
AGAAATTACGTGCCCTTAATCTAAGCAAAGAGGAGTGGCGTCGTGCTTTTCAGTTCTTGTTTATCAAGCTAGGGCAATTG
GAAGCCTTACAAGCCAATCACCAATTTACACCTGATGCTATTGGATTTATCATTCTTTACCTACTTGAAGGTTTGACCAA
GGACGACCAATTAGATGTTTTGGAGATTGGTTCGGGGACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
ACCTTAATTATATGGGAATGGAAGTTGACGATCTCCTTATCGATTTGTCAGCTAGTATTGCTGATGTGGTGAATTCGAGT
GCAGTTTACATCCAAGAAGATGCTGTTCGACCACATATTCTCAAAGAGAGTGATGTTATTATCAGTGACCTACCTGTTGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTTGCAGCAACTGGTGAACACACCTATGCCCATCACCTTCTCA
TGGAGCAATCACTCAAGTACTTGAAGAAAGATGGTATTGCTATTCTTTTGGCACCAACTAATCTTTTGACAAGCCCACAA
AGTGATTTGCTTAAGAAATGGCTATCAGGCTATGCTGATATTATTGCCGTTATCACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAATATGAAGTCTATCTTTGTGCTTAAAAAACAAACTGAAAATGCTCCTGAGACCTTCGTTTATCCACTTAGTG
ATTTGCAAAACCCAGAGGTCCTCAAAGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

70.476

99.057

0.698
  comYH Streptococcus mutans UA140

70.476

99.057

0.698