Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6U65_RS07690 Genome accession   NZ_CP145863
Coordinates   1695469..1696164 (-) Length   231 a.a.
NCBI ID   WP_410532322.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1690469..1701164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS07675 (V6U65_07670) - 1691280..1691825 (-) 546 WP_410532319.1 GNAT family N-acetyltransferase -
  V6U65_RS07680 (V6U65_07675) - 1691891..1693153 (-) 1263 WP_410532320.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6U65_RS07685 (V6U65_07680) comEC/celB 1693239..1695479 (-) 2241 WP_410532321.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6U65_RS07690 (V6U65_07685) comEA 1695469..1696164 (-) 696 WP_410532322.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6U65_RS07695 (V6U65_07690) - 1696273..1697028 (-) 756 WP_037599200.1 lysophospholipid acyltransferase family protein -
  V6U65_RS07700 (V6U65_07695) - 1697159..1698094 (+) 936 WP_175061944.1 polysaccharide deacetylase family protein -
  V6U65_RS07705 (V6U65_07700) - 1698144..1698908 (+) 765 WP_175061945.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6U65_RS07710 (V6U65_07705) - 1698912..1699181 (+) 270 WP_410532323.1 GIY-YIG nuclease family protein -
  V6U65_RS07715 (V6U65_07710) - 1699248..1699718 (-) 471 WP_410532324.1 hypothetical protein -
  V6U65_RS07720 (V6U65_07715) - 1699721..1700233 (-) 513 WP_410532325.1 hypothetical protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24545.60 Da        Isoelectric Point: 4.8571

>NTDB_id=940525 V6U65_RS07690 WP_410532322.1 1695469..1696164(-) (comEA) [Streptococcus salivarius strain KSS6]
MKEKIIAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKQGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVVKPGVYTLKAGTRVTDAIKAAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQVSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESIYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=940525 V6U65_RS07690 WP_410532322.1 1695469..1696164(-) (comEA) [Streptococcus salivarius strain KSS6]
GTGAAGGAAAAGATTATAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCCGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAACAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACTGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAAGGAGCCGTAGTCAAGCCAGGGGTTTATACGCTAAAAGCAGGCACTAGAGTGACTGA
CGCCATCAAAGCCGCTGGGGGAATGACCGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTGGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGTGTCTGACAAAGGA
GGGCAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGCGGCTTTCAGTCCGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACGTTAGATAAAATCAGAGAGTCCATCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(168-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.177

100

0.892
  comEA/celA/cilE Streptococcus mitis SK321

41.304

99.567

0.411
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

41.048

99.134

0.407
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae D39

39.035

98.701

0.385
  comEA/celA/cilE Streptococcus pneumoniae R6

39.035

98.701

0.385
  comEA Latilactobacillus sakei subsp. sakei 23K

35.27

100

0.368