Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   V6U62_RS08620 Genome accession   NZ_CP145860
Coordinates   1878748..1879647 (-) Length   299 a.a.
NCBI ID   WP_247922399.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1873748..1884647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS08605 (V6U62_08585) - 1874590..1875981 (+) 1392 WP_410535181.1 DUF4153 domain-containing protein -
  V6U62_RS08610 (V6U62_08590) - 1876033..1876365 (-) 333 WP_014633880.1 DUF805 domain-containing protein -
  V6U62_RS08615 (V6U62_08595) comA 1876477..1878573 (-) 2097 WP_272159129.1 peptide cleavage/export ABC transporter Regulator
  V6U62_RS08620 (V6U62_08600) comR 1878748..1879647 (-) 900 WP_247922399.1 XRE family transcriptional regulator Regulator
  V6U62_RS08625 (V6U62_08605) - 1879825..1880475 (-) 651 WP_048673883.1 phosphatase PAP2 family protein -
  V6U62_RS08630 (V6U62_08610) - 1880478..1881035 (-) 558 WP_037598980.1 ECF transporter S component -
  V6U62_RS08635 (V6U62_08615) - 1881346..1881855 (-) 510 WP_118172046.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  V6U62_RS08640 (V6U62_08620) trkA 1882133..1883482 (+) 1350 WP_014633874.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 35153.68 Da        Isoelectric Point: 5.8538

>NTDB_id=940335 V6U62_RS08620 WP_247922399.1 1878748..1879647(-) (comR) [Streptococcus salivarius strain KSS2]
MNIKDSIGLRIKTERERQQMSREVLCLDGAELTVRQLIRIEKGESLPSLDKLSYIAKRLGKNMADLLDHDNITIPDEYYE
MKNRLIKFPTYRNPERIKSKLALIEEVYEKFFELLPEEELLTLDILENILSFTNWEESPKVEEIYEDLFEQVKRKKKFST
NDLLVIDYYFFHLYGRKQFDKKLFERIVKRVLNQEIWTDDVYNIVLFNDLMAIAALKIFHNSFSDFLTVVDKALAVIEKS
QFYSYKPSVFVLKAKYELLHKGNKKKAAENYDKAIMFASVLEDSVLEESIKAGKAADGL

Nucleotide


Download         Length: 900 bp        

>NTDB_id=940335 V6U62_RS08620 WP_247922399.1 1878748..1879647(-) (comR) [Streptococcus salivarius strain KSS2]
TTGAACATAAAAGACAGCATTGGACTAAGAATCAAAACTGAGCGTGAACGCCAGCAGATGTCACGTGAAGTGCTATGTTT
AGATGGTGCGGAATTGACTGTTCGTCAGTTAATTCGTATTGAAAAAGGGGAGTCACTCCCGTCTTTGGATAAATTATCTT
ATATCGCCAAACGTCTAGGAAAAAATATGGCCGATCTATTGGATCATGACAATATTACCATTCCTGACGAATATTATGAG
ATGAAGAATCGTTTGATTAAGTTTCCAACGTACAGAAATCCAGAAAGAATAAAGTCTAAACTTGCCTTAATTGAGGAAGT
CTATGAGAAATTCTTTGAACTTCTTCCAGAAGAAGAGTTGTTAACTCTAGATATTTTGGAAAATATTTTGAGTTTTACTA
ATTGGGAGGAGAGCCCAAAGGTTGAAGAAATATATGAAGACTTGTTTGAACAAGTCAAAAGGAAGAAGAAATTCTCAACT
AACGATTTATTAGTTATTGACTATTATTTCTTCCATCTCTATGGAAGAAAACAGTTTGACAAAAAACTTTTTGAAAGGAT
TGTAAAGAGAGTATTAAATCAGGAAATTTGGACAGACGATGTCTATAATATTGTTTTATTTAATGATTTGATGGCTATCG
CTGCTTTGAAGATTTTTCACAATTCCTTTTCAGACTTCTTAACAGTTGTGGATAAAGCATTAGCCGTTATAGAAAAATCA
CAATTCTATAGCTATAAACCTAGTGTTTTTGTTCTCAAAGCTAAATATGAACTTCTGCATAAGGGAAATAAGAAAAAGGC
TGCAGAGAATTACGATAAGGCCATAATGTTTGCTTCCGTTTTAGAAGACTCGGTTTTAGAAGAAAGTATAAAAGCAGGGA
AAGCGGCAGATGGTTTATAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(75-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus salivarius strain HSISS4

97.659

100

0.977
  comR Streptococcus salivarius SK126

96.99

100

0.97
  comR Streptococcus thermophilus LMG 18311

94.314

100

0.943
  comR Streptococcus thermophilus LMD-9

93.645

100

0.936
  comR/comR2 Streptococcus sobrinus strain NIDR 6715-7

42.475

100

0.425
  comR/comR1 Streptococcus sobrinus strain NIDR 6715-7

42.14

100

0.421