Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   V6U62_RS00020 Genome accession   NZ_CP145860
Coordinates   3631..4866 (-) Length   411 a.a.
NCBI ID   WP_048676433.1    Uniprot ID   A0AB35IU66
Organism   Streptococcus salivarius strain KSS2     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1..9866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS00010 (V6U62_00010) dnaA 1196..2560 (-) 1365 WP_048676427.1 chromosomal replication initiator protein DnaA -
  V6U62_RS00015 (V6U62_00015) spo0J 2798..3565 (-) 768 WP_195187629.1 ParB/RepB/Spo0J family partition protein Regulator
  V6U62_RS00020 (V6U62_00020) htrA 3631..4866 (-) 1236 WP_048676433.1 S1C family serine protease Regulator
  V6U62_RS00025 (V6U62_00025) rlmH 5072..5551 (+) 480 WP_014632473.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  V6U62_RS00030 (V6U62_00030) - 5567..6250 (+) 684 WP_013991345.1 YoaK family protein -
  V6U62_RS00050 (V6U62_00050) - 6801..9395 (-) 2595 WP_195914756.1 YfhO family protein -

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42942.12 Da        Isoelectric Point: 4.6266

>NTDB_id=940281 V6U62_RS00020 WP_048676433.1 3631..4866(-) (htrA) [Streptococcus salivarius strain KSS2]
MKKFNWKKIVAPIAMLVIGLLGGLLGAFILLTAAGVSFTNSTDTGVKTAKTVYNNTTDTTKAVKKVQNAVVSVINYQEGS
SSDSLNELYGRIFGGDDSSDSNQDKSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKIKTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTVTMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISMADLNSLS
SSATSKLDLPDDVKAGVVVGSVQKGMPADGKLQENDVITEIDGKEISSKTDIQTNLYSHSIGDTIKVTFYRGKEKKTEEL
KLTKSTEDLSD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=940281 V6U62_RS00020 WP_048676433.1 3631..4866(-) (htrA) [Streptococcus salivarius strain KSS2]
GTGAAAAAATTTAACTGGAAAAAAATAGTAGCGCCAATTGCAATGCTTGTTATTGGCTTACTAGGTGGTTTACTAGGTGC
CTTTATCCTACTAACAGCAGCAGGGGTATCTTTTACCAATTCAACAGATACAGGTGTTAAAACAGCTAAGACCGTATACA
ATAATACAACAGATACAACTAAAGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTACCAAGAAGGATCA
TCTTCAGATTCTCTAAATGAACTTTATGGCCGTATCTTTGGTGGAGATGATAGTTCTGACTCTAACCAAGACAAATCAAA
AGATTCTGATGGGTTGCAAGTCGCTGGTGAAGGTTCTGGAGTCATCTATAAAAAAGATGGGAAAGAGGCCTACATCGTAA
CCAACAACCACGTTGTCGATGGCGCTAAAAAACTTGAAATCATGCTTTCAGATGGATCAAAAATTACTGGTGAACTCGTT
GGTAAAGATACTTACTCTGACCTAGCAGTTGTCAAAGTTTCTTCAGATAAAATTAAAACCGTAGCGGAATTTGCAGACTC
AAACTCTCTCACAGTCGGTGAGAAGGCAATTGCTATCGGTAGCCCACTTGGTACCGAATACGCCAACTCAGTAACAGAGG
GAATCGTTTCTAGCCTTAGCCGTACCGTAACTATGCAAAACGACAATGGTGAAACTGTTTCAACAAATGCTATCCAAACA
GATGCTGCCATTAACCCTGGTAACTCAGGTGGTGCCTTAGTCAATATCGAAGGACAAGTTATCGGTATTAACTCAAGTAA
AATTTCATCAACGTCAGCAGTCGCTGGTAGTGCCGTTGAAGGTATGGGATTTGCCATTCCATCAAACGATGTTGTCGAAA
TCATCAATCAATTGGAAAAAGACGGTAAAGTTACACGACCAGCCCTAGGAATCTCAATGGCCGATCTTAACAGCCTTTCT
AGCAGTGCAACTTCTAAATTAGATTTACCAGATGATGTGAAAGCTGGAGTTGTAGTCGGCAGCGTTCAAAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAAAATGATGTTATCACTGAAATTGACGGTAAGGAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATTGGAGATACAATCAAGGTAACCTTCTATCGTGGTAAAGAGAAGAAAACTGAAGAACTT
AAATTAACAAAATCTACAGAAGACTTGTCTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.538

98.054

0.603

  htrA Streptococcus gordonii str. Challis substr. CH1

57.635

98.783

0.569

  htrA Streptococcus pneumoniae Rx1

54.279

99.513

0.54

  htrA Streptococcus pneumoniae R6

54.279

99.513

0.54

  htrA Streptococcus pneumoniae TIGR4

54.279

99.513

0.54

  htrA Streptococcus pneumoniae D39

54.279

99.513

0.54

  htrA Streptococcus mitis NCTC 12261

54.279

99.513

0.54