Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   ABUS12_RS16295 Genome accession   NZ_CP169776
Coordinates   3386912..3388177 (-) Length   421 a.a.
NCBI ID   WP_001285406.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3381912..3393177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS12_RS16265 pncA 3382133..3382777 (-) 645 WP_000783437.1 bifunctional nicotinamidase/pyrazinamidase -
  ABUS12_RS16270 dapA 3383107..3384000 (+) 894 WP_000193600.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ABUS12_RS16275 - 3384016..3384618 (+) 603 WP_001177091.1 hypothetical protein -
  ABUS12_RS16280 purC 3384656..3385375 (+) 720 WP_000917863.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  ABUS12_RS16285 - 3385568..3385771 (+) 204 WP_000418559.1 hypothetical protein -
  ABUS12_RS16290 - 3386057..3386896 (+) 840 WP_000349494.1 formate/nitrite transporter family protein -
  ABUS12_RS16295 rarA 3386912..3388177 (-) 1266 WP_001285406.1 replication-associated recombination protein A Machinery gene
  ABUS12_RS16300 - 3388283..3389452 (-) 1170 WP_002009408.1 PQQ-dependent sugar dehydrogenase -
  ABUS12_RS16305 - 3389565..3390023 (-) 459 WP_000102817.1 YcgN family cysteine cluster protein -
  ABUS12_RS16310 - 3390218..3390376 (+) 159 WP_000490267.1 DUF1328 domain-containing protein -
  ABUS12_RS16315 - 3390548..3391285 (+) 738 WP_000100767.1 dienelactone hydrolase family protein -
  ABUS12_RS16320 - 3391471..3391833 (+) 363 WP_000130110.1 HIT family protein -
  ABUS12_RS16325 mutY 3391974..3393008 (+) 1035 WP_375591463.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 46945.60 Da        Isoelectric Point: 5.8354

>NTDB_id=940280 ABUS12_RS16295 WP_001285406.1 3386912..3388177(-) (rarA) [Acinetobacter baumannii strain Hv455]
MSDTHIPLPERLRPRDLSEIIGQDHLLGEHAPLRQMIDQGHLPSIIFWGPPGVGKTTIALLLAQAIDRPFVSLSALNTGV
KELREVIAESGDLLTPVVFIDEIHRFNKSQQDALLGAVEKGKITLIGATTENPSFEVNSALLSRCQVYTLNSLDSEAIQT
LLNNALQNDKFLKERYIHIEEYDALLQFAAGDARKALNLLDLIASTFEPEVENTINNAVVVKVAQQNIARYDKSGEQHYD
LVSAFIKSIRGSDPDAALYWMARMLKGGEDPVFIARRMLIAASEDIGNSNPNALLLAGECFRSVQAVGMPEARIILGQTA
VYLATSAKSNSTYLAINKALELAEKTANLPVPLHLRNAPTKLMKQQGYGINYLYPHDYPEHFVLQDYLPPELKGTKLYES
ARNKREVEGERLQQRRWQQEQ

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=940280 ABUS12_RS16295 WP_001285406.1 3386912..3388177(-) (rarA) [Acinetobacter baumannii strain Hv455]
ATGTCAGACACCCATATTCCACTTCCTGAACGCCTGCGCCCGAGAGACTTGTCTGAAATTATTGGGCAAGATCATTTGTT
AGGTGAACATGCGCCCTTACGTCAAATGATTGATCAGGGACATTTGCCTTCTATTATTTTTTGGGGGCCGCCAGGCGTCG
GTAAAACGACAATTGCTTTGCTTTTAGCTCAGGCAATAGATCGTCCATTTGTGAGCTTATCTGCGCTAAATACGGGCGTA
AAAGAATTACGTGAAGTGATTGCAGAAAGTGGTGACTTACTGACACCTGTAGTTTTTATTGACGAAATCCATCGCTTTAA
TAAATCACAGCAAGATGCATTATTAGGTGCCGTAGAAAAAGGTAAAATTACCTTAATTGGCGCCACCACTGAAAACCCGT
CTTTTGAAGTCAATAGTGCACTTTTATCACGCTGTCAGGTCTATACCTTAAACAGTTTAGACAGTGAAGCAATACAGACG
CTACTTAACAATGCACTCCAAAACGATAAATTTTTAAAAGAACGTTATATTCATATTGAAGAGTATGATGCTCTTTTACA
GTTTGCAGCAGGTGATGCCCGTAAAGCACTCAATTTACTTGACTTAATTGCAAGTACTTTTGAGCCCGAAGTTGAAAATA
CGATTAATAATGCAGTTGTAGTAAAAGTCGCTCAGCAAAATATTGCGCGTTATGACAAATCGGGTGAACAGCATTACGAC
CTCGTTTCTGCCTTTATCAAATCGATTCGTGGTAGTGATCCGGATGCGGCTTTGTACTGGATGGCGCGGATGCTTAAAGG
CGGGGAAGATCCGGTTTTTATTGCAAGACGTATGTTGATTGCCGCTTCAGAAGACATTGGAAACTCGAATCCAAATGCAC
TATTGCTTGCAGGTGAATGTTTCCGTTCTGTACAGGCGGTGGGAATGCCTGAGGCTCGAATTATTTTGGGCCAAACAGCA
GTTTATTTAGCGACCAGTGCAAAAAGTAATAGTACTTACCTCGCAATTAATAAGGCCTTAGAACTTGCTGAGAAAACGGC
AAATTTACCAGTACCTTTACACTTGAGAAATGCGCCAACCAAACTGATGAAACAGCAAGGTTATGGAATTAATTATCTCT
ATCCTCATGACTACCCAGAGCACTTTGTGTTGCAAGACTACTTGCCACCTGAGTTAAAGGGAACCAAACTCTATGAGTCG
GCGAGAAACAAGCGTGAAGTTGAAGGTGAACGCCTACAACAACGCAGATGGCAGCAGGAACAATAG

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(181-250)

MgsA AAA+ ATPase C terminal (MgsA_C)

(251-410)

ATPase family associated with various cellular activities (AAA) (AAA)

(45-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.303

95.487

0.375