Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   V6T01_RS10200 Genome accession   NZ_CP145856
Coordinates   2157562..2158797 (+) Length   411 a.a.
NCBI ID   WP_060972104.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2152562..2163797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS10170 (V6T01_10145) - 2153034..2155628 (+) 2595 WP_107372429.1 YfhO family protein -
  V6T01_RS10190 (V6T01_10165) - 2156177..2156860 (-) 684 WP_002892206.1 YoaK family protein -
  V6T01_RS10195 (V6T01_10170) rlmH 2156877..2157356 (-) 480 WP_107373293.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  V6T01_RS10200 (V6T01_10175) htrA 2157562..2158797 (+) 1236 WP_060972104.1 S1C family serine protease Regulator
  V6T01_RS10205 (V6T01_10180) spo0J 2158863..2159630 (+) 768 WP_060972105.1 ParB/RepB/Spo0J family partition protein Regulator
  V6T01_RS10210 (V6T01_10185) dnaA 2159868..2161232 (+) 1365 WP_037599382.1 chromosomal replication initiator protein DnaA -

Sequence


Protein


Download         Length: 411 a.a.        Molecular weight: 42959.14 Da        Isoelectric Point: 4.6266

>NTDB_id=940214 V6T01_RS10200 WP_060972104.1 2157562..2158797(+) (htrA) [Streptococcus salivarius strain KSS1]
MKKFNWKKIVAPIAMLVIGLLGGLLGAFILLTAAGISFTNTTDTGVKTAKTVYNNTTDTTKAVKKVQNAVVSVINYQEGS
SSDSLNELYGRIFGGDDSSDSSQDKSKDSDGLQVAGEGSGVIYKKDGKEAYIVTNNHVVDGAKKLEIMLSDGSKITGELV
GKDTYSDLAVVKVSSDKIKTVAEFADSNSLTVGEKAIAIGSPLGTEYANSVTEGIVSSLSRTVTMQNDNGETVSTNAIQT
DAAINPGNSGGALVNIEGQVIGINSSKISSTSAVAGSAVEGMGFAIPSNDVVEIINQLEKDGKVTRPALGISMADLNSLS
SSATSKLDLPDDVKSGVVVGSVQKGMPADGKLQENDVITEIDGKEISSKTDIQTNLYSHSIGDTIKVTFYRGKEKKTEEL
KLTKSTEDLSD

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=940214 V6T01_RS10200 WP_060972104.1 2157562..2158797(+) (htrA) [Streptococcus salivarius strain KSS1]
GTGAAAAAATTTAACTGGAAAAAAATAGTAGCGCCAATTGCAATGCTTGTTATTGGCTTACTAGGTGGTCTACTAGGTGC
CTTTATCCTATTAACAGCAGCAGGGATATCTTTTACCAATACAACAGATACAGGTGTTAAAACAGCTAAGACCGTATACA
ACAATACAACAGATACAACTAAGGCTGTTAAGAAAGTACAAAATGCCGTTGTTTCTGTCATCAATTACCAAGAAGGCTCA
TCTTCAGATTCCCTAAATGAACTTTATGGTCGTATTTTTGGTGGAGATGATAGTTCTGATTCTAGCCAAGACAAATCAAA
AGATTCTGATGGGTTGCAAGTCGCTGGTGAAGGTTCCGGTGTTATCTATAAAAAAGATGGGAAAGAGGCCTACATCGTAA
CCAACAACCACGTTGTTGATGGTGCTAAAAAACTTGAAATCATGCTTTCAGATGGATCAAAAATTACTGGTGAACTCGTT
GGTAAAGATACTTACTCTGACCTAGCAGTTGTCAAAGTTTCTTCAGATAAAATTAAAACAGTCGCAGAATTTGCAGACTC
AAACTCTCTCACAGTCGGCGAGAAGGCAATTGCTATCGGTAGTCCACTTGGTACCGAATACGCCAACTCAGTAACAGAGG
GAATCGTATCTAGCCTTAGCCGTACCGTAACTATGCAAAACGACAATGGTGAAACTGTCTCAACAAATGCTATCCAAACA
GATGCTGCCATTAACCCTGGTAACTCAGGTGGTGCCTTAGTCAATATCGAAGGACAAGTTATCGGTATTAACTCAAGTAA
GATTTCATCAACGTCAGCAGTCGCTGGTAGCGCAGTTGAAGGTATGGGATTTGCCATTCCATCAAACGATGTTGTCGAGA
TTATAAATCAATTGGAAAAAGACGGTAAAGTTACACGACCAGCCTTAGGAATCTCAATGGCCGATCTTAATAGCCTTTCT
AGCAGTGCAACTTCTAAATTAGATTTACCAGATGATGTGAAATCTGGAGTTGTAGTCGGCAGCGTTCAAAAAGGTATGCC
AGCTGACGGTAAACTTCAAGAAAATGATGTTATCACTGAAATTGACGGTAAGGAAATCAGCTCAAAAACTGATATTCAAA
CCAATCTTTACAGCCATAGTATCGGAGATACAATCAAGGTAACCTTCTATCGTGGTAAAGAGAAGAAAACTGAAGAACTT
AAATTAACAAAATCTACAGAAGACTTATCTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

62.283

98.054

0.611

  htrA Streptococcus gordonii str. Challis substr. CH1

57.524

100

0.577

  htrA Streptococcus mitis NCTC 12261

54.768

99.513

0.545

  htrA Streptococcus pneumoniae TIGR4

54.523

99.513

0.543

  htrA Streptococcus pneumoniae D39

54.523

99.513

0.543

  htrA Streptococcus pneumoniae Rx1

54.523

99.513

0.543

  htrA Streptococcus pneumoniae R6

54.523

99.513

0.543