Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   R9A00_RS08175 Genome accession   NZ_AP028376
Coordinates   1584281..1586179 (+) Length   632 a.a.
NCBI ID   WP_002883130.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10927     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1579281..1591179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS08145 (B10927_16140) - 1579946..1580218 (+) 273 WP_002858971.1 NifU family protein -
  R9A00_RS08150 (B10927_16150) - 1580205..1580756 (+) 552 WP_002855727.1 hypothetical protein -
  R9A00_RS08155 (B10927_16160) murE 1580740..1582023 (+) 1284 WP_057033514.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase -
  R9A00_RS08160 (B10927_16170) - 1582027..1582338 (+) 312 WP_002851172.1 YbaB/EbfC family nucleoid-associated protein -
  R9A00_RS08165 (B10927_16180) - 1582335..1583429 (+) 1095 WP_002867547.1 PDZ domain-containing protein -
  R9A00_RS08170 (B10927_16190) ispA 1583426..1584271 (+) 846 WP_002883129.1 polyprenyl synthetase family protein -
  R9A00_RS08175 (B10927_16200) recP/tkt 1584281..1586179 (+) 1899 WP_002883130.1 transketolase Machinery gene
  R9A00_RS08180 (B10927_16210) iamB 1586181..1587290 (+) 1110 WP_002883131.1 ABC transporter permease -
  R9A00_RS08185 (B10927_16220) iamA 1587291..1588013 (+) 723 WP_002856037.1 ABC transporter ATP-binding protein -
  R9A00_RS08190 (B10927_16230) - 1588016..1588906 (+) 891 WP_002875843.1 MlaD family protein -
  R9A00_RS08195 (B10927_16240) - 1588906..1589505 (+) 600 WP_002875844.1 ABC-type transport auxiliary lipoprotein family protein -
  R9A00_RS08200 (B10927_16250) - 1589561..1590061 (+) 501 WP_002855995.1 flagellar FLiS export co-chaperone -

Sequence

Protein


Download         Length: 632 a.a.        Molecular weight: 69628.36 Da        Isoelectric Point: 6.2860

>NTDB_id=93887 R9A00_RS08175 WP_002883130.1 1584281..1586179(+) (recP/tkt) [Campylobacter jejuni strain BCH-10927]
MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSYHLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSG
YDLSLEDLKNFRQLHSKTPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
YEACSLAGLHKLDNFILIYDSNDISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYEEINKALEQAKKSTKPCLIIAKT
TIAKGAGELEGSHKSHGAPLGEEVIKKAKEQASFDPNISFHIPQASKIRFESAVELGDLEETKWKDKLEKSGKKELLERL
LNPDFSKIAYPDFKGKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFVEGKNIHFGIREHAMAAINNA
FARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTHQPIEQLSTFRAMPNFLTFRPADGVENV
KAWQIALNADIPSAFVLSRQKLKALNEPVFGDVKNGAYLLKESKDAKFTLLASGSEVWLCLESANELEKQGFACNVVSMP
CFEFFEKQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFEHFGFSVSKLVNFILSK

Nucleotide


Download         Length: 1899 bp        

>NTDB_id=93887 R9A00_RS08175 WP_002883130.1 1584281..1586179(+) (recP/tkt) [Campylobacter jejuni strain BCH-10927]
ATGGACATTCAAATTTTACAAGAACAGGCAAATACTCTAAGATTTTTAAGTGCCGATATGGTGCAAAAAGCAAACTCAGG
ACACCCAGGTGCACCTTTGGGCTTAGCAGATATTTTAAGTGTTTTAAGTTATCATTTAAAACACAATCCCAAAAATCCAA
CTTGGCTAAACCGTGATAGACTTGTATTTTCAGGTGGACATGCAAGTGCTTTACTTTATAGTTTTTTACATTTAAGTGGC
TATGATTTAAGCCTAGAAGATCTTAAAAATTTCCGCCAACTTCATTCTAAAACCCCAGGACACCCTGAAATTTCAACTCT
TGGAGTAGAGATTGCTACAGGCCCTTTAGGACAAGGCGTTGCCAATGCTGTAGGCTTTGCTATGGCGGCAAAAAAAGCAC
AAAATTTACTAGGTAGTGATTTAATCGATCATAAAATTTATTGTCTTTGCGGAGATGGAGATTTGCAAGAAGGCATTTCT
TATGAAGCTTGTTCTTTAGCAGGACTTCACAAACTTGATAATTTCATACTTATTTATGATAGCAACGATATCTCCATAGA
AGGCGATGTAGGTTTAGCCTTTAACGAAAATGTAAAAATGCGTTTTGAAGCACAAGGATTTGAAGTTTTAAGTATAAATG
GACACGATTATGAAGAAATTAATAAAGCCTTAGAACAAGCTAAAAAATCCACAAAACCTTGTCTTATCATCGCAAAAACA
ACTATAGCAAAGGGTGCAGGAGAGCTTGAAGGCAGTCATAAAAGCCATGGTGCACCTTTGGGTGAAGAAGTGATTAAAAA
AGCTAAAGAACAAGCAAGTTTTGATCCAAATATCAGTTTTCATATCCCACAAGCAAGCAAAATCCGCTTTGAAAGTGCTG
TAGAACTTGGGGATTTAGAAGAAACAAAATGGAAAGATAAGCTTGAAAAAAGTGGTAAAAAAGAACTTTTAGAAAGGCTA
TTAAATCCCGATTTTAGCAAGATAGCTTATCCTGATTTTAAAGGAAAAGATCTTGCTACAAGAGATAGTAATGGTGAAAT
TTTAAATGTTTTAGCTAAAAATTTAGAAGGATTTTTAGGTGGAAGTGCAGATTTAGGCCCTTCAAACAAAACAGAACTTC
ACGGCATGGGAGACTTTGTAGAAGGTAAAAATATCCATTTTGGTATCAGAGAACACGCTATGGCAGCGATTAACAATGCT
TTTGCAAGATATGGAATTTTCTTACCATTTTCGGCAACTTTTTTCATCTTTAGCGAGTACTTAAAACCTGCCGCAAGAAT
AGCAGCCTTAATGAAAATCAAACATTTTTTCATTTTCACGCACGATAGTATAGGCGTGGGCGAAGATGGGCCAACACACC
AGCCTATAGAACAACTTAGCACTTTTAGAGCTATGCCAAATTTTTTAACCTTTAGACCTGCTGATGGAGTAGAAAATGTC
AAAGCTTGGCAAATAGCTCTAAATGCTGATATTCCGAGTGCTTTTGTGCTTTCACGCCAAAAACTCAAAGCTCTAAATGA
ACCTGTTTTTGGAGATGTAAAAAATGGAGCGTATTTACTTAAAGAAAGCAAAGATGCTAAATTTACACTTTTAGCAAGTG
GAAGTGAAGTTTGGCTTTGTCTAGAAAGTGCAAATGAACTTGAAAAACAAGGTTTTGCTTGTAATGTTGTTTCCATGCCT
TGTTTTGAATTTTTTGAAAAACAAGATAAAGCTTATCAAGAAAGATTGTTAAAAGGTGAAGTTATAGGTGTTGAAGCAGC
ACATTCTAATGAACTTTATAAATTTTGCCATAAAGTGTATGGCATAGAAAGTTTTGGAGAAAGCGGCAAAGACAAAGATG
TATTTGAACACTTTGGATTTAGCGTTTCAAAGCTTGTAAATTTTATCCTTAGCAAATAA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(338-503)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(7-314)

Transketolase, C-terminal domain (Transketolase_C)

(522-623)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

40.278

100

0.413

Multiple sequence alignment