Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NGK70_RS25925 Genome accession   NZ_AP025730
Coordinates   5963025..5964536 (+) Length   503 a.a.
NCBI ID   WP_251971304.1    Uniprot ID   -
Organism   Sphaerotilus microaerophilus strain FB-5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5958025..5969536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGK70_RS25905 (CATMQ487_51460) gshA 5958625..5959920 (-) 1296 WP_251971301.1 glutamate--cysteine ligase -
  NGK70_RS25910 (CATMQ487_51470) amt 5960099..5961628 (-) 1530 WP_251973905.1 ammonium transporter -
  NGK70_RS25915 (CATMQ487_51480) - 5961663..5962001 (-) 339 WP_251971302.1 P-II family nitrogen regulator -
  NGK70_RS25920 (CATMQ487_51490) - 5962038..5962775 (-) 738 WP_251971303.1 TorF family putative porin -
  NGK70_RS25925 (CATMQ487_51500) comM 5963025..5964536 (+) 1512 WP_251971304.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  NGK70_RS25930 (CATMQ487_51510) - 5964612..5965361 (+) 750 WP_251973906.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  NGK70_RS25935 (CATMQ487_51520) - 5965592..5967433 (+) 1842 WP_251971305.1 phosphoenolpyruvate carboxykinase (GTP) -
  NGK70_RS25940 (CATMQ487_51530) - 5967531..5967800 (-) 270 WP_251971306.1 hypothetical protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 53065.88 Da        Isoelectric Point: 7.3622

>NTDB_id=93810 NGK70_RS25925 WP_251971304.1 5963025..5964536(+) (comM) [Sphaerotilus microaerophilus strain FB-5]
MSLALVHSRALLGLQAPDVTVEVHLANGLPSFTLVGLADTEVKEARERVRSALQSSGLDFPHNKRITVNLAPADLPKEGA
RFDLPIAVGILAASGQIQGDLEGLEFAGELSLAGDLRDVRGALAMAVALQRAGSTRTLVLPRTSAMEAARVPGLQLRLAD
HLLDVVQALQPAETAQALATPQPAAPDAPPPWPDLRDVKGQTQAKRALEIAATGNHSVLFVGPPGTGKSMLAQRLVGLLP
PLREEEALESAAILSLAGQFDPRGWARRVLRAPHHTASAVALVGGGSPPRPGEISLAHHGVLFLDELPEYPRAALEAMRE
PLDSGRIRISRAARQAEFPARCQLVAAMNPCPCGHQGSPLRACRCSPDAVTRYQARLSGPLLDRIDLRVEVPVLPPEVLN
AVADGEPSAVVAERVAAARTLQWQRQGCWNADLEGPALDEHAHAAKAALDFLHAAALRLGWSGRSVHRVLRIARSAADAA
GAADIGVAHVAEAIQLRRALAAA

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=93810 NGK70_RS25925 WP_251971304.1 5963025..5964536(+) (comM) [Sphaerotilus microaerophilus strain FB-5]
ATGTCACTCGCCCTGGTCCACAGCCGCGCCCTGCTCGGGCTGCAAGCACCCGACGTCACCGTCGAAGTGCATCTCGCCAA
CGGCCTGCCCAGCTTCACGCTGGTCGGGCTGGCCGACACCGAGGTCAAGGAGGCGCGCGAGCGGGTGCGCTCCGCCCTGC
AGAGCAGCGGACTGGATTTCCCGCACAACAAGCGCATCACCGTCAACCTGGCACCGGCCGACCTGCCGAAGGAAGGCGCA
CGCTTCGACCTGCCGATCGCGGTGGGCATCCTCGCGGCCAGCGGCCAGATCCAGGGCGATCTGGAGGGGCTGGAGTTCGC
CGGCGAGCTGTCGCTGGCCGGTGACCTGCGCGACGTGCGCGGCGCCCTCGCGATGGCCGTGGCCCTGCAACGTGCTGGCA
GCACGCGCACCCTGGTGCTGCCACGCACCAGCGCAATGGAAGCCGCGCGCGTGCCCGGCCTGCAGCTGCGCCTGGCCGAC
CACCTGCTTGATGTGGTGCAGGCGCTGCAGCCCGCCGAGACCGCCCAGGCGCTGGCCACGCCGCAACCTGCCGCCCCGGA
TGCCCCCCCGCCCTGGCCGGACTTGCGTGACGTCAAGGGGCAGACCCAGGCCAAGCGGGCGCTGGAGATCGCGGCCACCG
GCAACCACAGCGTCCTGTTCGTCGGCCCACCCGGTACCGGCAAGTCGATGCTGGCGCAGCGCCTGGTCGGGCTGCTGCCG
CCGCTGCGCGAGGAGGAGGCGCTCGAATCCGCCGCGATCCTCAGCCTGGCCGGGCAGTTCGACCCGCGCGGCTGGGCACG
GCGCGTCCTGCGCGCGCCCCACCACACCGCCTCGGCGGTGGCACTGGTGGGTGGGGGTTCGCCGCCCCGGCCGGGCGAGA
TCTCGTTGGCCCACCACGGTGTGCTCTTCCTCGATGAGCTGCCCGAGTACCCCCGCGCCGCGCTGGAAGCGATGCGTGAG
CCGCTCGACAGCGGCCGCATCCGCATCTCGCGCGCGGCCCGCCAGGCCGAGTTCCCGGCCCGCTGCCAGCTGGTCGCGGC
GATGAACCCCTGCCCCTGCGGCCACCAGGGCTCGCCGCTGCGCGCCTGCCGCTGCAGCCCGGATGCGGTCACGCGCTACC
AGGCCCGCCTCTCCGGGCCGCTGCTGGACCGCATCGACCTGCGCGTCGAGGTGCCCGTGCTCCCCCCGGAGGTGCTCAAC
GCCGTGGCCGACGGCGAGCCCAGCGCCGTGGTCGCCGAGCGGGTCGCCGCCGCGCGCACCTTGCAGTGGCAGCGCCAGGG
CTGCTGGAACGCCGACCTCGAAGGCCCGGCCCTGGACGAGCACGCCCACGCCGCGAAGGCCGCGCTGGACTTCCTCCATG
CCGCCGCCCTGCGCCTGGGCTGGTCCGGCCGCAGCGTGCACCGGGTGCTGCGCATCGCACGCAGCGCCGCCGATGCCGCA
GGCGCGGCGGACATCGGCGTGGCACACGTCGCAGAGGCCATCCAGCTGCGGCGCGCACTGGCGGCCGCCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.896

99.602

0.517
  comM Haemophilus influenzae Rd KW20

51.093

100

0.511
  comM Vibrio campbellii strain DS40M4

51.2

99.404

0.509
  comM Glaesserella parasuis strain SC1401

50.693

100

0.509
  comM Legionella pneumophila str. Paris

46.304

100

0.473
  comM Legionella pneumophila strain ERS1305867

46.304

100

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.107

100

0.414

Multiple sequence alignment