Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEPM0_RS15075 Genome accession   NZ_CP168731
Coordinates   3180787..3181329 (-) Length   180 a.a.
NCBI ID   WP_028852576.1    Uniprot ID   -
Organism   Ralstonia pseudosolanacearum strain RUN6285     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3175787..3186329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM0_RS15050 (ACEPM0_15050) - 3176022..3176843 (+) 822 WP_011000387.1 beta-ketoacyl synthase chain length factor -
  ACEPM0_RS15055 (ACEPM0_15055) - 3176840..3177349 (+) 510 WP_016724277.1 hotdog family protein -
  ACEPM0_RS15060 (ACEPM0_15060) - 3177379..3177636 (+) 258 WP_011000385.1 hypothetical protein -
  ACEPM0_RS15065 (ACEPM0_15065) - 3178052..3178626 (-) 575 Protein_2945 transposase -
  ACEPM0_RS15070 (ACEPM0_15070) - 3178859..3180400 (-) 1542 WP_197345547.1 site-specific integrase -
  ACEPM0_RS15075 (ACEPM0_15075) ssb 3180787..3181329 (-) 543 WP_028852576.1 single-stranded DNA-binding protein Machinery gene
  ACEPM0_RS15080 (ACEPM0_15080) - 3181377..3182540 (-) 1164 WP_405124729.1 MFS transporter -
  ACEPM0_RS15085 (ACEPM0_15085) uvrA 3182763..3185627 (+) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  ACEPM0_RS15090 (ACEPM0_15090) - 3185707..3186192 (+) 486 WP_087451578.1 adenosine-specific kinase -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 18780.63 Da        Isoelectric Point: 5.9786

>NTDB_id=936731 ACEPM0_RS15075 WP_028852576.1 3180787..3181329(-) (ssb) [Ralstonia pseudosolanacearum strain RUN6285]
MASVNKVIIVGNLGADPETRYMPSGDAVTNIRVATTDRYKDKASGEMREATEWHRIAFFGRLAEIAGEYLKKGSQVYVEG
RLKTRQWEKDGQKQYSTEIVAEQMQMLGSRQGMGGEGGGGGGGGGYSRGESSGGGGYGGGRAQGGGGMSRGEGGGGQGGG
ARRQPAPSNGFEDMDDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=936731 ACEPM0_RS15075 WP_028852576.1 3180787..3181329(-) (ssb) [Ralstonia pseudosolanacearum strain RUN6285]
ATGGCGTCCGTCAACAAAGTCATCATCGTCGGCAATCTCGGCGCCGATCCCGAAACGCGTTACATGCCGAGCGGCGACGC
CGTCACCAATATCCGCGTGGCGACCACCGACCGCTACAAGGACAAGGCCAGCGGCGAAATGCGCGAGGCCACCGAGTGGC
ACCGCATCGCCTTCTTCGGCCGCCTGGCCGAAATCGCCGGCGAATACCTGAAGAAGGGTTCGCAGGTCTACGTCGAAGGC
CGCCTCAAGACCCGCCAGTGGGAGAAGGACGGCCAGAAACAGTACAGCACCGAAATCGTCGCCGAGCAGATGCAGATGCT
CGGCAGCCGCCAGGGCATGGGCGGCGAGGGCGGCGGCGGTGGTGGCGGTGGTGGCTACTCGCGCGGCGAATCGTCGGGCG
GTGGCGGTTACGGCGGTGGCCGTGCCCAGGGCGGCGGCGGTATGAGCCGCGGCGAAGGCGGTGGTGGTCAAGGCGGCGGC
GCGCGCCGTCAGCCAGCGCCTTCGAATGGGTTTGAGGATATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.462

100

0.511
  ssb Vibrio cholerae strain A1552

47.594

100

0.494
  ssb Neisseria meningitidis MC58

43.646

100

0.439
  ssb Neisseria gonorrhoeae MS11

43.094

100

0.433
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

100

0.378