Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   ACEPM0_RS15085 Genome accession   NZ_CP168731
Coordinates   3182763..3185627 (+) Length   954 a.a.
NCBI ID   WP_011000381.1    Uniprot ID   Q8Y2B6
Organism   Ralstonia pseudosolanacearum strain RUN6285     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3177763..3190627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPM0_RS15065 (ACEPM0_15065) - 3178052..3178626 (-) 575 Protein_2945 transposase -
  ACEPM0_RS15070 (ACEPM0_15070) - 3178859..3180400 (-) 1542 WP_197345547.1 site-specific integrase -
  ACEPM0_RS15075 (ACEPM0_15075) ssb 3180787..3181329 (-) 543 WP_028852576.1 single-stranded DNA-binding protein Machinery gene
  ACEPM0_RS15080 (ACEPM0_15080) - 3181377..3182540 (-) 1164 WP_405124729.1 MFS transporter -
  ACEPM0_RS15085 (ACEPM0_15085) uvrA 3182763..3185627 (+) 2865 WP_011000381.1 excinuclease ABC subunit UvrA Machinery gene
  ACEPM0_RS15090 (ACEPM0_15090) - 3185707..3186192 (+) 486 WP_087451578.1 adenosine-specific kinase -
  ACEPM0_RS15095 (ACEPM0_15095) - 3186293..3186913 (-) 621 WP_197345548.1 LysE family translocator -
  ACEPM0_RS15100 (ACEPM0_15100) - 3187013..3187606 (-) 594 WP_043876535.1 adenine phosphoribosyltransferase -
  ACEPM0_RS15105 (ACEPM0_15105) - 3187739..3188317 (+) 579 WP_011000377.1 DJ-1/PfpI family protein -
  ACEPM0_RS15110 (ACEPM0_15110) - 3188362..3188766 (+) 405 WP_011000376.1 ribbon-helix-helix domain-containing protein -

Sequence

Protein


Download         Length: 954 a.a.        Molecular weight: 105656.19 Da        Isoelectric Point: 6.9429

>NTDB_id=936732 ACEPM0_RS15085 WP_011000381.1 3182763..3185627(+) (uvrA) [Ralstonia pseudosolanacearum strain RUN6285]
MEAIKIRGARTHNLKNINLDLPRNQLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMEKPDVDLIEGLS
PAISIEQKATSHNPRSTVGTVTEIHDYLRLLYARAGTPYCPEHGQPLEAQSVSQMVDAVLALPADTKLMILAPVVTNRKG
EHVDLFEAMQAQGFVRFRIRSGGGTAHEAEAKVYEVDALPKLKKNDKHAIEVVVDRVKVNPELKQRLAESFETALRLADG
RALALEMDTGKEHVFSSKFACPICSYSLPELEPRLFSFNNPMGACPHCDGLGQITFFDPKRVVAFPNLSLASGAIKGWDR
RNQFYFQMLQSLAAFYDFDTDTPFEELPSEVQDVVLQGSGKQQIPFTYINERGRTTVREHAFEGIIPNLERRYKETDSIA
VREELAKYQNNQACPECEGTRLRREARHVKLGDSDQARAIYEINGWPLRDALTYFLTLNLHGAKREIADKIVQEITSRLN
FLNNVGLDYLSLERSADTLSGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLKHLRDLGNSVLVVEHDE
DMIRASDHVVDIGPGAGVHGGQIIAEGTPRQIERSPGSLTGEYLSGKRRIEVPKQRTAPDEARWLRIVNASGNNLKHVNA
DIPVGLLTCVTGVSGSGKSTLINDTLYNAVARHLYGSTPEPTAHDRIDGLEHFDKVINVDQSPIGRTPRSNPATYTGLFT
PIRELYAGVPAAKERGYDPGRFSFNVKGGRCEACQGDGVLKVEMHFLPDVYVPCDVCHGKRYNRETLEVLYKGKNITEVL
EMTVEQAHEFFAPVPVVRRKLQTLLDVGLGYIRLGQSATTLSGGEAQRVKLSLELSKRDTGRTLYILDEPTTGLHFHDIE
LLLKVIHKLRDQGNTVVIIEHNLDVIKTADWLLDLGPEGGAGGGQIIAKGTPEEVAKSRASFTGKYLAPLLKRK

Nucleotide


Download         Length: 2865 bp        

>NTDB_id=936732 ACEPM0_RS15085 WP_011000381.1 3182763..3185627(+) (uvrA) [Ralstonia pseudosolanacearum strain RUN6285]
ATGGAAGCCATCAAGATTCGTGGGGCCCGGACCCACAACCTGAAGAACATCAACCTCGATCTGCCGCGCAATCAGCTGGT
TGTGATCACGGGGCTGTCGGGATCGGGCAAGTCGTCGCTCGCGTTCGACACACTCTATGCGGAAGGGCAGCGCCGCTACG
TGGAGTCACTGTCGGCCTATGCGCGGCAGTTCCTGCAACTGATGGAAAAGCCGGACGTCGACCTGATCGAAGGCCTGTCG
CCGGCCATCTCGATCGAACAGAAGGCCACCAGCCACAACCCGCGCTCCACCGTCGGCACCGTCACCGAGATCCACGACTA
CCTGCGCCTGCTGTACGCCCGCGCCGGCACGCCCTACTGCCCGGAGCACGGCCAGCCGCTGGAAGCGCAGAGCGTGTCGC
AGATGGTGGATGCCGTGCTGGCGCTGCCGGCCGACACCAAGCTGATGATCCTGGCGCCCGTGGTGACCAACCGCAAGGGC
GAGCACGTGGACCTGTTCGAGGCGATGCAGGCGCAGGGCTTCGTGCGCTTCCGCATCCGCTCGGGCGGCGGCACGGCGCA
CGAGGCCGAAGCCAAGGTCTACGAGGTCGACGCGCTGCCCAAGCTGAAGAAGAACGACAAGCACGCCATCGAGGTGGTGG
TCGATCGCGTCAAGGTCAACCCGGAACTCAAGCAGCGCCTGGCCGAATCCTTCGAGACCGCGCTGCGCCTGGCCGACGGC
CGCGCCCTCGCGCTGGAGATGGACACGGGCAAGGAGCACGTCTTCAGCTCCAAGTTCGCCTGCCCGATCTGCTCGTATTC
GCTGCCGGAGCTGGAGCCGCGCCTGTTCTCGTTCAACAACCCGATGGGCGCCTGCCCCCATTGCGACGGCCTGGGCCAGA
TCACCTTCTTCGACCCGAAGCGCGTGGTGGCCTTCCCCAACCTGTCGCTGGCCTCGGGCGCCATCAAGGGCTGGGACCGC
CGCAACCAGTTCTACTTCCAGATGCTGCAGAGCCTGGCGGCGTTCTACGACTTCGACACCGACACGCCGTTCGAAGAGCT
GCCCAGTGAAGTCCAGGACGTCGTGCTGCAGGGCTCGGGCAAGCAGCAGATCCCGTTCACGTACATCAACGAACGCGGCC
GCACCACGGTGCGCGAGCATGCCTTCGAGGGCATCATCCCCAACCTGGAGCGGCGCTACAAGGAAACCGACTCCATCGCC
GTGCGCGAAGAACTGGCCAAGTACCAGAACAACCAGGCCTGCCCCGAGTGCGAGGGCACGCGCCTGCGCCGCGAGGCGCG
CCACGTCAAGCTCGGCGACAGCGACCAGGCCCGCGCCATCTACGAGATCAACGGCTGGCCGCTACGCGATGCGCTCACAT
ATTTCCTCACGCTGAACCTGCACGGCGCCAAGCGCGAGATCGCCGACAAGATCGTCCAGGAAATCACCTCGCGGCTGAAC
TTCCTGAACAACGTCGGGCTCGACTACCTCTCGCTGGAGCGCAGCGCCGACACGCTCTCCGGCGGCGAGGCGCAGCGCAT
CCGCCTGGCCTCGCAGATCGGCTCGGGCCTGACCGGCGTGATGTACGTGCTGGACGAGCCCTCCATCGGCCTGCACCAGC
GCGACAACGACCGGCTGATCGGCACCCTCAAGCACCTGCGCGACCTCGGCAACTCGGTGCTGGTGGTCGAGCACGATGAA
GACATGATCCGCGCCTCGGACCACGTGGTCGACATCGGCCCCGGCGCCGGCGTGCACGGCGGCCAGATCATCGCCGAAGG
CACGCCCAGGCAGATCGAGCGGTCACCCGGCTCGCTGACCGGCGAATACCTGTCGGGCAAGCGCCGCATCGAGGTGCCCA
AGCAGCGCACCGCGCCCGACGAAGCGCGCTGGCTGCGCATCGTCAACGCGTCGGGCAACAACCTGAAGCACGTCAACGCC
GACATCCCGGTCGGGCTGCTCACCTGCGTGACGGGCGTATCGGGCTCGGGCAAATCGACGCTGATCAACGACACGCTGTA
CAACGCGGTGGCGCGCCACCTCTACGGCTCCACCCCGGAGCCCACCGCGCACGACCGCATCGACGGCCTGGAGCACTTCG
ACAAGGTCATCAACGTCGACCAGTCGCCGATCGGCCGCACCCCGCGCTCCAACCCGGCCACCTACACCGGCCTGTTCACG
CCGATCCGCGAGCTGTATGCGGGCGTGCCGGCCGCCAAGGAGCGCGGCTACGACCCGGGCCGCTTCTCGTTCAACGTCAA
GGGCGGCCGCTGCGAGGCGTGCCAGGGCGACGGCGTGCTCAAGGTCGAGATGCACTTCCTGCCCGACGTGTACGTGCCCT
GCGACGTGTGCCACGGCAAGCGCTACAACCGCGAAACGCTGGAGGTGCTGTACAAGGGCAAGAACATCACCGAAGTGCTC
GAGATGACGGTCGAGCAGGCGCACGAGTTCTTCGCGCCGGTGCCGGTGGTGCGCCGCAAGCTGCAGACGCTGCTGGACGT
GGGCCTGGGCTACATCCGCCTGGGCCAGTCGGCGACCACGCTGTCGGGCGGCGAGGCGCAGCGCGTGAAGCTGTCGCTGG
AGCTGTCCAAGCGCGACACCGGCCGCACGCTCTACATCCTCGACGAGCCGACCACCGGCCTGCACTTCCACGACATCGAG
CTGCTGCTCAAGGTGATCCACAAGCTGCGCGACCAGGGCAACACGGTCGTCATCATCGAGCACAACCTCGACGTGATCAA
AACGGCGGACTGGCTGCTCGACCTCGGCCCCGAAGGCGGCGCCGGCGGCGGGCAGATCATCGCCAAGGGCACGCCGGAGG
AGGTGGCCAAGAGCCGCGCGAGCTTTACCGGCAAGTATCTGGCGCCGTTGCTCAAGCGCAAATGA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(130-245)

UvrA DNA-binding domain (UvrA_DNA-bind)

(298-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y2B6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae TIGR4

56.917

99.266

0.565
  uvrA Streptococcus pneumoniae D39

56.917

99.266

0.565