Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5F92_RS03045 Genome accession   NZ_CP145050
Coordinates   587975..588448 (+) Length   157 a.a.
NCBI ID   WP_195764224.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_H_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582975..593448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F92_RS03020 (V5F92_03020) dnaB 583480..584883 (+) 1404 WP_012503477.1 replicative DNA helicase -
  V5F92_RS03025 (V5F92_03025) pilH 585140..585802 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F92_RS03030 (V5F92_03030) pilV 585834..586442 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5F92_RS03035 (V5F92_03035) pilJ 586439..587383 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  V5F92_RS03040 (V5F92_03040) pilK 587362..587973 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F92_RS03045 (V5F92_03045) pilL 587975..588448 (+) 474 WP_195764224.1 PilX family type IV pilin Machinery gene
  V5F92_RS03050 (V5F92_03050) - 588518..588826 (-) 309 WP_003706588.1 AzlD family protein -
  V5F92_RS03055 (V5F92_03055) - 588823..589534 (-) 712 Protein_587 AzlC family ABC transporter permease -
  V5F92_RS03060 (V5F92_03060) dut 589700..590152 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5F92_RS03065 (V5F92_03065) dapC 590224..591411 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5F92_RS03070 (V5F92_03070) yaaA 591567..592346 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17530.27 Da        Isoelectric Point: 9.5865

>NTDB_id=936455 V5F92_RS03045 WP_195764224.1 587975..588448(+) (pilL) [Neisseria gonorrhoeae strain WHO_H_2024]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRNATSAQTYSETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=936455 V5F92_RS03045 WP_195764224.1 587975..588448(+) (pilL) [Neisseria gonorrhoeae strain WHO_H_2024]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTAATGCCA
CTTCTGCCCAGACCTATTCGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

98.089

100

0.981
  pilX Neisseria meningitidis 8013

84.713

100

0.847