Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5F92_RS03025 Genome accession   NZ_CP145050
Coordinates   585140..585802 (+) Length   220 a.a.
NCBI ID   WP_047916986.1    Uniprot ID   A0AA44U7R7
Organism   Neisseria gonorrhoeae strain WHO_H_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 580140..590802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F92_RS03000 (V5F92_03000) cysT 580317..581146 (-) 830 Protein_576 sulfate ABC transporter permease subunit CysT -
  V5F92_RS03005 (V5F92_03005) - 581332..581664 (+) 333 WP_003687908.1 hypothetical protein -
  V5F92_RS03010 (V5F92_03010) - 581994..582503 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F92_RS03015 (V5F92_03015) - 582735..583316 (-) 582 WP_003690895.1 superoxide dismutase -
  V5F92_RS03020 (V5F92_03020) dnaB 583480..584883 (+) 1404 WP_012503477.1 replicative DNA helicase -
  V5F92_RS03025 (V5F92_03025) pilH 585140..585802 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F92_RS03030 (V5F92_03030) pilV 585834..586442 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5F92_RS03035 (V5F92_03035) pilJ 586439..587383 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  V5F92_RS03040 (V5F92_03040) pilK 587362..587973 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F92_RS03045 (V5F92_03045) pilL 587975..588448 (+) 474 WP_195764224.1 PilX family type IV pilin Machinery gene
  V5F92_RS03050 (V5F92_03050) - 588518..588826 (-) 309 WP_003706588.1 AzlD family protein -
  V5F92_RS03055 (V5F92_03055) - 588823..589534 (-) 712 Protein_587 AzlC family ABC transporter permease -
  V5F92_RS03060 (V5F92_03060) dut 589700..590152 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24557.00 Da        Isoelectric Point: 9.6166

>NTDB_id=936451 V5F92_RS03025 WP_047916986.1 585140..585802(+) (pilH) [Neisseria gonorrhoeae strain WHO_H_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNFKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=936451 V5F92_RS03025 WP_047916986.1 585140..585802(+) (pilH) [Neisseria gonorrhoeae strain WHO_H_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTTCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.455

100

0.955