Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   V5F92_RS03040 Genome accession   NZ_CP145050
Coordinates   587362..587973 (+) Length   203 a.a.
NCBI ID   WP_003687918.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_H_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582362..592973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F92_RS03015 (V5F92_03015) - 582735..583316 (-) 582 WP_003690895.1 superoxide dismutase -
  V5F92_RS03020 (V5F92_03020) dnaB 583480..584883 (+) 1404 WP_012503477.1 replicative DNA helicase -
  V5F92_RS03025 (V5F92_03025) pilH 585140..585802 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F92_RS03030 (V5F92_03030) pilV 585834..586442 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5F92_RS03035 (V5F92_03035) pilJ 586439..587383 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  V5F92_RS03040 (V5F92_03040) pilK 587362..587973 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F92_RS03045 (V5F92_03045) pilL 587975..588448 (+) 474 WP_195764224.1 PilX family type IV pilin Machinery gene
  V5F92_RS03050 (V5F92_03050) - 588518..588826 (-) 309 WP_003706588.1 AzlD family protein -
  V5F92_RS03055 (V5F92_03055) - 588823..589534 (-) 712 Protein_587 AzlC family ABC transporter permease -
  V5F92_RS03060 (V5F92_03060) dut 589700..590152 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5F92_RS03065 (V5F92_03065) dapC 590224..591411 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5F92_RS03070 (V5F92_03070) yaaA 591567..592346 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22153.94 Da        Isoelectric Point: 5.3780

>NTDB_id=936454 V5F92_RS03040 WP_003687918.1 587362..587973(+) (pilK) [Neisseria gonorrhoeae strain WHO_H_2024]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEVFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTGNVSKMP
RYIIEYLGEKNNQNIYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=936454 V5F92_RS03040 WP_003687918.1 587362..587973(+) (pilK) [Neisseria gonorrhoeae strain WHO_H_2024]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGTTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGTTATATTATCGAATATTTGGGCGAGAAGAATAACCAAAATATTTACAGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTGCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

100

100

1