Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   V5F92_RS03030 Genome accession   NZ_CP145050
Coordinates   585834..586442 (+) Length   202 a.a.
NCBI ID   WP_003692820.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_H_2024     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 580834..591442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F92_RS03005 (V5F92_03005) - 581332..581664 (+) 333 WP_003687908.1 hypothetical protein -
  V5F92_RS03010 (V5F92_03010) - 581994..582503 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5F92_RS03015 (V5F92_03015) - 582735..583316 (-) 582 WP_003690895.1 superoxide dismutase -
  V5F92_RS03020 (V5F92_03020) dnaB 583480..584883 (+) 1404 WP_012503477.1 replicative DNA helicase -
  V5F92_RS03025 (V5F92_03025) pilH 585140..585802 (+) 663 WP_047916986.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5F92_RS03030 (V5F92_03030) pilV 585834..586442 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  V5F92_RS03035 (V5F92_03035) pilJ 586439..587383 (+) 945 WP_047916984.1 PilW family protein Machinery gene
  V5F92_RS03040 (V5F92_03040) pilK 587362..587973 (+) 612 WP_003687918.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5F92_RS03045 (V5F92_03045) pilL 587975..588448 (+) 474 WP_195764224.1 PilX family type IV pilin Machinery gene
  V5F92_RS03050 (V5F92_03050) - 588518..588826 (-) 309 WP_003706588.1 AzlD family protein -
  V5F92_RS03055 (V5F92_03055) - 588823..589534 (-) 712 Protein_587 AzlC family ABC transporter permease -
  V5F92_RS03060 (V5F92_03060) dut 589700..590152 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5F92_RS03065 (V5F92_03065) dapC 590224..591411 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 5.0254

>NTDB_id=936452 V5F92_RS03030 WP_003692820.1 585834..586442(+) (pilV) [Neisseria gonorrhoeae strain WHO_H_2024]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYMRNSIPSAVDGDFKVDAVKSKVQLADEQLKRFGYELKNALPDAVAIHYAVCKDSSGKAPALSGDAFSSNCDNKENG
DTLIKVLWVNDSAGDSDISRTNLEVSGGNIVYTYQARVGGRE

Nucleotide


Download         Length: 609 bp        

>NTDB_id=936452 V5F92_RS03030 WP_003692820.1 585834..586442(+) (pilV) [Neisseria gonorrhoeae strain WHO_H_2024]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAAACGCAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACATGAGAAACTCTATACCATCAGCTGTGGATGGCGATTTTAAGGTTGATGCCGTGAAAAGTAAGGTGCA
GTTGGCGGATGAACAATTGAAGAGATTTGGTTATGAGCTGAAAAATGCCTTGCCGGATGCGGTAGCTATTCATTACGCCG
TCTGCAAGGATTCGTCGGGTAAGGCGCCGGCATTGTCCGGCGATGCTTTTTCTTCAAATTGCGACAATAAGGAAAACGGG
GATACTTTAATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGG
CGGCAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

89.806

100

0.916
  pilI Neisseria gonorrhoeae MS11

85.644

100

0.856
  pilV Neisseria gonorrhoeae MS11

85.644

100

0.856