Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   V5G02_RS02680 Genome accession   NZ_CP145026
Coordinates   521757..522362 (+) Length   201 a.a.
NCBI ID   WP_353074677.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516757..527362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS02655 (V5G02_02655) - 517200..517532 (+) 333 WP_003687908.1 hypothetical protein -
  V5G02_RS02660 (V5G02_02660) - 517863..518372 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G02_RS02665 (V5G02_02665) - 518604..519185 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G02_RS02670 (V5G02_02670) dnaB 519349..520755 (+) 1407 WP_047923824.1 replicative DNA helicase -
  V5G02_RS02675 (V5G02_02675) pilH 521063..521725 (+) 663 WP_263328822.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G02_RS02680 (V5G02_02680) pilI 521757..522362 (+) 606 WP_353074677.1 type IV pilus modification protein PilV Machinery gene
  V5G02_RS02685 (V5G02_02685) pilJ 522359..523303 (+) 945 WP_263328823.1 PilW family protein Machinery gene
  V5G02_RS02690 (V5G02_02690) pilK 523282..523890 (+) 609 WP_047920987.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G02_RS02695 (V5G02_02695) pilL 523892..524365 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  V5G02_RS02700 (V5G02_02700) - 524435..524743 (-) 309 WP_263328824.1 AzlD family protein -
  V5G02_RS02705 (V5G02_02705) - 524740..525451 (-) 712 Protein_523 AzlC family ABC transporter permease -
  V5G02_RS02710 (V5G02_02710) dut 525617..526069 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5G02_RS02715 (V5G02_02715) dapC 526141..527328 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21934.75 Da        Isoelectric Point: 4.5992

>NTDB_id=936065 V5G02_RS02680 WP_353074677.1 521757..522362(+) (pilI) [Neisseria gonorrhoeae strain WHO_S2_2024]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTESYTSTSDGDFALDKLKSKKDLAKAQLDRFGYELRNALPDAVAIHYAVCKDSSGNAPTLSGDTFSPNCDDKANGD
TLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGRE

Nucleotide


Download         Length: 606 bp        

>NTDB_id=936065 V5G02_RS02680 WP_353074677.1 521757..522362(+) (pilI) [Neisseria gonorrhoeae strain WHO_S2_2024]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACAGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACTGAGTCGTACACCTCCACTTCTGACGGCGATTTTGCACTTGATAAGCTTAAAAGCAAGAAGGATTT
GGCAAAGGCCCAGTTGGACAGGTTCGGTTATGAATTGAGAAACGCCTTGCCGGATGCGGTAGCTATTCATTACGCCGTCT
GCAAGGATTCGTCGGGTAACGCGCCGACATTGTCCGGCGATACTTTTTCTCCAAATTGCGACGATAAGGCAAACGGGGAT
ACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGTGAGCGGCGA
CAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCGTGAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

90.594

100

0.91
  pilV Neisseria gonorrhoeae MS11

90.594

100

0.91
  pilV Neisseria meningitidis 8013

86.408

100

0.886