Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G02_RS02675 Genome accession   NZ_CP145026
Coordinates   521063..521725 (+) Length   220 a.a.
NCBI ID   WP_263328822.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 516063..526725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS02650 (V5G02_02650) cysT 516183..517019 (-) 837 WP_047923822.1 sulfate ABC transporter permease subunit CysT -
  V5G02_RS02655 (V5G02_02655) - 517200..517532 (+) 333 WP_003687908.1 hypothetical protein -
  V5G02_RS02660 (V5G02_02660) - 517863..518372 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G02_RS02665 (V5G02_02665) - 518604..519185 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G02_RS02670 (V5G02_02670) dnaB 519349..520755 (+) 1407 WP_047923824.1 replicative DNA helicase -
  V5G02_RS02675 (V5G02_02675) pilH 521063..521725 (+) 663 WP_263328822.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G02_RS02680 (V5G02_02680) pilI 521757..522362 (+) 606 WP_353074677.1 type IV pilus modification protein PilV Machinery gene
  V5G02_RS02685 (V5G02_02685) pilJ 522359..523303 (+) 945 WP_263328823.1 PilW family protein Machinery gene
  V5G02_RS02690 (V5G02_02690) pilK 523282..523890 (+) 609 WP_047920987.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G02_RS02695 (V5G02_02695) pilL 523892..524365 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  V5G02_RS02700 (V5G02_02700) - 524435..524743 (-) 309 WP_263328824.1 AzlD family protein -
  V5G02_RS02705 (V5G02_02705) - 524740..525451 (-) 712 Protein_523 AzlC family ABC transporter permease -
  V5G02_RS02710 (V5G02_02710) dut 525617..526069 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24304.79 Da        Isoelectric Point: 9.1947

>NTDB_id=936064 V5G02_RS02675 WP_263328822.1 521063..521725(+) (pilH) [Neisseria gonorrhoeae strain WHO_S2_2024]
MCTRKQQGFTLIELLIVMAIAAIMATIALPNMGGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGAPN
NGCDFSKKGRGMLAFGDKNGNKAYDGDTKDVFLRNVVLNDTDDSRINYAFNHIAFGSSQPKADCVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=936064 V5G02_RS02675 WP_263328822.1 521063..521725(+) (pilH) [Neisseria gonorrhoeae strain WHO_S2_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAATAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGGGCGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TTTCCAGGGGCGAAGCCGTTCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGCCCAAC
AATGGATGTGATTTCAGCAAGAAGGGGCGGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGCATATGACGGCGA
TACTAAGGATGTTTTTCTCCGCAACGTGGTATTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACTGTGTAGTTTGGACGTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959