Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilJ   Type   Machinery gene
Locus tag   V5G02_RS02685 Genome accession   NZ_CP145026
Coordinates   522359..523303 (+) Length   314 a.a.
NCBI ID   WP_263328823.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_S2_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 517359..528303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G02_RS02660 (V5G02_02660) - 517863..518372 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G02_RS02665 (V5G02_02665) - 518604..519185 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G02_RS02670 (V5G02_02670) dnaB 519349..520755 (+) 1407 WP_047923824.1 replicative DNA helicase -
  V5G02_RS02675 (V5G02_02675) pilH 521063..521725 (+) 663 WP_263328822.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G02_RS02680 (V5G02_02680) pilI 521757..522362 (+) 606 WP_353074677.1 type IV pilus modification protein PilV Machinery gene
  V5G02_RS02685 (V5G02_02685) pilJ 522359..523303 (+) 945 WP_263328823.1 PilW family protein Machinery gene
  V5G02_RS02690 (V5G02_02690) pilK 523282..523890 (+) 609 WP_047920987.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G02_RS02695 (V5G02_02695) pilL 523892..524365 (+) 474 WP_170959666.1 PilX family type IV pilin Machinery gene
  V5G02_RS02700 (V5G02_02700) - 524435..524743 (-) 309 WP_263328824.1 AzlD family protein -
  V5G02_RS02705 (V5G02_02705) - 524740..525451 (-) 712 Protein_523 AzlC family ABC transporter permease -
  V5G02_RS02710 (V5G02_02710) dut 525617..526069 (+) 453 WP_003701071.1 dUTP diphosphatase -
  V5G02_RS02715 (V5G02_02715) dapC 526141..527328 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G02_RS02720 (V5G02_02720) yaaA 527484..528263 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence


Protein


Download         Length: 314 a.a.        Molecular weight: 34356.19 Da        Isoelectric Point: 9.5287

>NTDB_id=936066 V5G02_RS02685 WP_263328823.1 522359..523303(+) (pilJ) [Neisseria gonorrhoeae strain WHO_S2_2024]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHIEQDVVSDVTQKNSPFSLKRNSTRNSANKLIPIAESSNIVYQGFAQVRPALIFQYGIDDVNASAETTVVSSCG
AISKPGKQIPTLEDAKKELKIQNSGKEQNGNIARQRHVVNAYAVGRIAGEEGLFRFQLDDKGKWGNPQLLAKKIKRMKVL
YIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGLNAKIAASSDNSIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 945 bp        

>NTDB_id=936066 V5G02_RS02685 WP_263328823.1 522359..523303(+) (pilJ) [Neisseria gonorrhoeae strain WHO_S2_2024]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATATCGAACAGGATGTTGTTTCCGATGTGACGCAAAAAAACTCTCCTTTTTCCTTAAAAAG
GAACAGTACAAGGAACAGTGCAAATAAACTTATCCCCATAGCGGAATCTTCAAATATCGTATATCAGGGTTTTGCCCAGG
TTCGTCCGGCATTGATTTTCCAATACGGAATCGATGATGTTAATGCAAGCGCCGAGACTACCGTCGTCAGCAGCTGTGGC
GCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTCAGAATTCTGGTAAGGA
GCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGGTGAGGAAGGTTTGT
TCCGCTTCCAATTGGATGATAAGGGCAAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAAAGTGCTG
TATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAGCAATTCAAATATACGGATAAATTCGACAG
CTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGCCTTAATGCCAAGATTGCCGCTTCTTCAGACAATAGTA
TTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

90.764

100

0.908