Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   V1500_RS18910 Genome accession   NZ_CP143547
Coordinates   3845758..3846054 (-) Length   98 a.a.
NCBI ID   WP_409301658.1    Uniprot ID   -
Organism   Peribacillus sp. SCS-155     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3840758..3851054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1500_RS18870 (V1500_18870) - 3840903..3842591 (+) 1689 WP_409301643.1 DEAD/DEAH box helicase -
  V1500_RS18875 (V1500_18875) - 3842569..3843363 (+) 795 WP_409301644.1 YqhG family protein -
  V1500_RS18880 (V1500_18880) - 3843452..3843628 (-) 177 WP_409301646.1 YqzE family protein -
  V1500_RS18885 (V1500_18885) - 3843643..3844158 (-) 516 WP_409301648.1 shikimate kinase -
  V1500_RS18890 (V1500_18890) comGG 3844176..3844553 (-) 378 WP_409301650.1 competence type IV pilus minor pilin ComGG -
  V1500_RS18895 (V1500_18895) comGF 3844543..3844986 (-) 444 WP_409301652.1 competence type IV pilus minor pilin ComGF -
  V1500_RS18900 (V1500_18900) - 3844970..3845311 (-) 342 WP_409301654.1 hypothetical protein -
  V1500_RS18905 (V1500_18905) comGD 3845298..3845768 (-) 471 WP_409301656.1 competence type IV pilus minor pilin ComGD -
  V1500_RS18910 (V1500_18910) comGC 3845758..3846054 (-) 297 WP_409301658.1 competence type IV pilus major pilin ComGC Machinery gene
  V1500_RS18915 (V1500_18915) comGB 3846065..3847099 (-) 1035 WP_409301660.1 competence type IV pilus assembly protein ComGB -
  V1500_RS18920 (V1500_18920) comGA 3847086..3848156 (-) 1071 WP_409301662.1 competence type IV pilus ATPase ComGA Machinery gene
  V1500_RS18925 (V1500_18925) - 3848282..3848635 (-) 354 WP_409301664.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  V1500_RS18930 (V1500_18930) - 3848834..3849529 (+) 696 WP_409301665.1 helix-turn-helix transcriptional regulator -
  V1500_RS18935 (V1500_18935) - 3849612..3849857 (+) 246 WP_409301667.1 DUF2626 domain-containing protein -
  V1500_RS18940 (V1500_18940) - 3849939..3851033 (-) 1095 WP_409301668.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10553.45 Da        Isoelectric Point: 7.7862

>NTDB_id=929612 V1500_RS18910 WP_409301658.1 3845758..3846054(-) (comGC) [Peribacillus sp. SCS-155]
MNQKGFTLVEMLVVLLVISILLIITIPNITKNQSTIQGKGCQAFLKMAQAQVQAYEIDENKLPADVAELKTKGYLKDTTC
PNGKAITMSASGEISVAP

Nucleotide


Download         Length: 297 bp        

>NTDB_id=929612 V1500_RS18910 WP_409301658.1 3845758..3846054(-) (comGC) [Peribacillus sp. SCS-155]
ATGAATCAAAAAGGATTTACCCTAGTAGAAATGCTTGTTGTTTTGTTGGTTATTTCGATATTGCTGATTATTACAATCCC
CAATATTACGAAAAATCAATCAACGATTCAGGGGAAGGGATGCCAGGCATTCTTGAAGATGGCTCAGGCGCAAGTCCAGG
CATATGAAATCGATGAGAATAAATTGCCTGCTGACGTCGCGGAGCTTAAGACAAAAGGGTATTTAAAGGATACAACTTGC
CCCAATGGGAAAGCCATTACCATGAGTGCGTCCGGGGAAATCTCTGTTGCTCCGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

53.608

98.98

0.531
  comGC Staphylococcus aureus MW2

45.652

93.878

0.429
  comGC Staphylococcus aureus N315

45.652

93.878

0.429
  comGC/cglC Streptococcus mitis SK321

42.222

91.837

0.388
  comGC/cglC Streptococcus pneumoniae R6

41.111

91.837

0.378
  comGC/cglC Streptococcus pneumoniae D39

41.111

91.837

0.378
  comGC/cglC Streptococcus pneumoniae Rx1

41.111

91.837

0.378
  comGC/cglC Streptococcus pneumoniae TIGR4

41.111

91.837

0.378