NTDB

Overview

Name	comGA	Type	Machinery gene
Locus tag	V1500_RS18920	Genome accession	NZ_CP143547
Coordinates	3847086..3848156 (-)	Length	356 a.a.
NCBI ID	WP_409301662.1	Uniprot ID	-
Organism	Peribacillus sp. SCS-155
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3842086..3853156

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V1500_RS18875 (V1500_18875)	-	3842569..3843363 (+)	795	WP_409301644.1	YqhG family protein	-
V1500_RS18880 (V1500_18880)	-	3843452..3843628 (-)	177	WP_409301646.1	YqzE family protein	-
V1500_RS18885 (V1500_18885)	-	3843643..3844158 (-)	516	WP_409301648.1	shikimate kinase	-
V1500_RS18890 (V1500_18890)	comGG	3844176..3844553 (-)	378	WP_409301650.1	competence type IV pilus minor pilin ComGG	-
V1500_RS18895 (V1500_18895)	comGF	3844543..3844986 (-)	444	WP_409301652.1	competence type IV pilus minor pilin ComGF	-
V1500_RS18900 (V1500_18900)	-	3844970..3845311 (-)	342	WP_409301654.1	hypothetical protein	-
V1500_RS18905 (V1500_18905)	comGD	3845298..3845768 (-)	471	WP_409301656.1	competence type IV pilus minor pilin ComGD	-
V1500_RS18910 (V1500_18910)	comGC	3845758..3846054 (-)	297	WP_409301658.1	competence type IV pilus major pilin ComGC	Machinery gene
V1500_RS18915 (V1500_18915)	comGB	3846065..3847099 (-)	1035	WP_409301660.1	competence type IV pilus assembly protein ComGB	-
V1500_RS18920 (V1500_18920)	comGA	3847086..3848156 (-)	1071	WP_409301662.1	competence type IV pilus ATPase ComGA	Machinery gene
V1500_RS18925 (V1500_18925)	-	3848282..3848635 (-)	354	WP_409301664.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
V1500_RS18930 (V1500_18930)	-	3848834..3849529 (+)	696	WP_409301665.1	helix-turn-helix transcriptional regulator	-
V1500_RS18935 (V1500_18935)	-	3849612..3849857 (+)	246	WP_409301667.1	DUF2626 domain-containing protein	-
V1500_RS18940 (V1500_18940)	-	3849939..3851033 (-)	1095	WP_409301668.1	class I SAM-dependent methyltransferase	-
V1500_RS18945 (V1500_18945)	-	3851111..3851746 (-)	636	WP_409301669.1	MBL fold metallo-hydrolase	-
V1500_RS18950 (V1500_18950)	-	3852421..3852594 (+)	174	WP_409301670.1	DUF2759 domain-containing protein	-
V1500_RS18955 (V1500_18955)	-	3852643..3852957 (-)	315	WP_409301672.1	MTH1187 family thiamine-binding protein	-

Sequence

Protein

Download Length: 356 a.a. Molecular weight: 39953.42 Da Isoelectric Point: 9.4264

                                >NTDB_id=929613 V1500_RS18920 WP_409301662.1 3847086..3848156(-) (comGA) [Peribacillus sp. SCS-155]

MESIEKIAERILTSAVRLQASDIHILPRKEGPLVQFRIENKIYPQHILTLEESERLISHFKFLASMDIGEKRRPQSGAIT

MSVKRKTLGLRLSTLPASYSESLVIRLIPQQNILPLRQLSIFANTANKLMALLKHSHGMIIFTGPTGSGKTTTLYSLLHH

AKEIVNRHVITLEDPIENQSNEVLQVQINEKAGISYSVGLKAALRHDPDIIMVGEIRDAETARIAVRAALTGHLILTTMH

TRDARGAVFRLLEFGVSLLEIEETLLAVTAQRLLELTCPHCMGECSPECQGSAKKKRASVYELLYGPALASVIDSARGGT

KRTRYRQLRQEIAKAIAMGFVKEEEYDRWVYEDEKK

Nucleotide

Download Length: 1071 bp

                                >NTDB_id=929613 V1500_RS18920 WP_409301662.1 3847086..3848156(-) (comGA) [Peribacillus sp. SCS-155]

TTGGAATCTATTGAAAAAATAGCAGAAAGGATTTTAACCAGTGCTGTAAGGCTGCAGGCGTCAGATATACATATTCTGCC

GCGCAAGGAAGGGCCGCTTGTTCAATTTCGCATTGAAAATAAGATTTACCCTCAGCATATACTCACACTAGAGGAATCCG

AACGACTCATCTCGCATTTTAAATTCCTTGCCTCAATGGATATTGGAGAGAAGAGAAGGCCGCAAAGCGGTGCAATAACG

ATGTCGGTCAAAAGAAAAACACTTGGCCTTCGCCTATCCACACTGCCTGCTTCATACTCAGAAAGCCTCGTCATCCGCTT

AATACCACAGCAAAACATCCTTCCTTTAAGACAACTGTCAATTTTCGCAAATACAGCCAATAAGCTTATGGCCTTGTTAA

AGCATTCCCACGGGATGATCATTTTTACAGGACCGACCGGCAGCGGCAAAACCACTACCTTATATTCTCTACTCCACCAC

GCAAAAGAAATTGTTAACCGACATGTAATCACCCTGGAAGATCCCATTGAAAACCAATCAAATGAAGTGTTGCAAGTCCA

AATCAATGAGAAGGCGGGGATTTCCTATTCAGTTGGCCTTAAGGCTGCACTGCGGCATGATCCGGACATCATTATGGTAG

GAGAAATAAGAGATGCTGAAACGGCCAGAATTGCCGTCAGGGCTGCCTTGACCGGACACTTAATTCTGACAACTATGCAT

ACCCGCGATGCACGGGGAGCGGTGTTTCGCCTCCTTGAATTCGGTGTCAGCCTGCTGGAAATCGAAGAGACCTTGTTGGC

TGTTACCGCTCAAAGGCTGCTCGAGCTTACATGCCCTCATTGCATGGGAGAATGTTCCCCAGAGTGCCAGGGCTCAGCCA

AGAAAAAACGCGCCAGTGTATATGAATTGCTTTATGGGCCTGCATTGGCCTCTGTCATCGACTCAGCTAGGGGAGGAACC

AAGAGGACACGATACCGCCAGCTGAGACAAGAAATTGCGAAAGCGATCGCCATGGGTTTTGTGAAGGAAGAAGAATACGA

CCGCTGGGTATATGAAGATGAAAAGAAGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-274)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGA	Bacillus subtilis subsp. subtilis str. 168	55.211	99.719	0.551
pilB	Glaesserella parasuis strain SC1401	40.356	94.663	0.382
pilB	Haemophilus influenzae 86-028NP	38.068	98.876	0.376
pilB	Haemophilus influenzae Rd KW20	36.648	98.876	0.362

Detailed information NTG0929613