Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   V1497_RS06905 Genome accession   NZ_CP143541
Coordinates   1333390..1333581 (+) Length   63 a.a.
NCBI ID   WP_349410246.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 1328390..1338581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS06870 (V1497_06880) - 1328910..1329206 (+) 297 WP_349410239.1 hypothetical protein -
  V1497_RS06875 (V1497_06885) - 1329308..1329487 (+) 180 WP_349410240.1 YjzC family protein -
  V1497_RS06880 (V1497_06890) - 1329583..1330305 (+) 723 WP_349410241.1 amino acid ABC transporter ATP-binding protein -
  V1497_RS06885 (V1497_06895) - 1330359..1330538 (-) 180 WP_349410242.1 YjzD family protein -
  V1497_RS06890 (V1497_06900) - 1330760..1331503 (+) 744 WP_349410243.1 alpha/beta hydrolase -
  V1497_RS06895 (V1497_06905) - 1331655..1332359 (+) 705 WP_349410244.1 NAD(P)-dependent oxidoreductase -
  V1497_RS06900 (V1497_06910) - 1332421..1333374 (+) 954 WP_349410245.1 BMP family ABC transporter substrate-binding protein -
  V1497_RS06905 (V1497_06915) comZ 1333390..1333581 (+) 192 WP_349410246.1 ComZ family protein Regulator
  V1497_RS06910 (V1497_06920) - 1333924..1334859 (+) 936 WP_349410247.1 beta-ketoacyl-ACP synthase III -
  V1497_RS06915 (V1497_06925) fabF 1334881..1336122 (+) 1242 WP_349410248.1 beta-ketoacyl-ACP synthase II -
  V1497_RS06920 (V1497_06930) - 1336321..1337247 (+) 927 WP_349410249.1 glycerophosphodiester phosphodiesterase -
  V1497_RS06925 (V1497_06935) - 1337381..1337602 (+) 222 WP_349410250.1 hypothetical protein -
  V1497_RS06930 (V1497_06940) - 1337713..1338462 (+) 750 WP_349410251.1 YjbA family protein -

Sequence

Protein


Download         Length: 63 a.a.        Molecular weight: 7445.58 Da        Isoelectric Point: 4.1605

>NTDB_id=929360 V1497_RS06905 WP_349410246.1 1333390..1333581(+) (comZ) [Pseudalkalibacillus sp. SCS-8]
MNQERNMKFMQIAMSRLPEAKQFMEQKGIEITMEDIQPMMNLLMNVMNDAYELGRSDAQENTE

Nucleotide


Download         Length: 192 bp        

>NTDB_id=929360 V1497_RS06905 WP_349410246.1 1333390..1333581(+) (comZ) [Pseudalkalibacillus sp. SCS-8]
ATGAACCAGGAACGAAATATGAAATTCATGCAAATCGCAATGTCACGATTGCCAGAGGCGAAGCAGTTCATGGAACAAAA
AGGCATTGAAATCACAATGGAAGATATTCAGCCAATGATGAATTTGTTAATGAACGTGATGAATGATGCGTATGAATTAG
GCCGATCTGATGCGCAAGAAAACACTGAATAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(4-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

57.143

100

0.571