Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   V1497_RS07045 Genome accession   NZ_CP143541
Coordinates   1361841..1363661 (+) Length   606 a.a.
NCBI ID   WP_349410273.1    Uniprot ID   -
Organism   Pseudalkalibacillus sp. SCS-8     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1356841..1368661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1497_RS07025 (V1497_07035) - 1357055..1357726 (-) 672 WP_349410269.1 TerC family protein -
  V1497_RS07030 (V1497_07040) mecA 1358146..1358817 (+) 672 WP_349410270.1 adaptor protein MecA -
  V1497_RS07035 (V1497_07045) cls 1358920..1360434 (+) 1515 WP_349410271.1 cardiolipin synthase -
  V1497_RS07040 (V1497_07050) - 1360531..1361721 (+) 1191 WP_349410272.1 competence protein CoiA -
  V1497_RS07045 (V1497_07055) pepF 1361841..1363661 (+) 1821 WP_349410273.1 oligoendopeptidase F Regulator
  V1497_RS07050 (V1497_07060) - 1363697..1363879 (-) 183 WP_349410274.1 hypothetical protein -
  V1497_RS07055 (V1497_07065) - 1363965..1364855 (-) 891 WP_349410759.1 ClpXP adapter SpxH family protein -
  V1497_RS07060 (V1497_07070) - 1364910..1365290 (-) 381 WP_349410275.1 globin -
  V1497_RS07065 (V1497_07075) - 1365478..1366095 (-) 618 WP_349410760.1 lytic transglycosylase domain-containing protein -
  V1497_RS07070 (V1497_07080) - 1366163..1366756 (-) 594 WP_349410276.1 CYTH domain-containing protein -
  V1497_RS07075 (V1497_07085) - 1366875..1367267 (+) 393 WP_349410277.1 hypothetical protein -
  V1497_RS07080 (V1497_07090) - 1367318..1367944 (+) 627 WP_349410278.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 606 a.a.        Molecular weight: 70180.87 Da        Isoelectric Point: 4.5519

>NTDB_id=929363 V1497_RS07045 WP_349410273.1 1361841..1363661(+) (pepF) [Pseudalkalibacillus sp. SCS-8]
MAEQAVKSLPKREEIPVKDTWDLEAIFETDEVWEAEFKKIKELIPQIDQYQGKLGESADVLYEALQLQNEITMRLGKLYT
YAHMRYDQDTTNSFYQGLNDRASSLATETSSHLSFIVPEILSLEESIIRSFVEEKEELKLYEHMLDEINRSRPHVLSQKE
EALLAGVSEVTNSSSNTFGMLNNADMKFPTIKDENGEEVEITHGRYIRFLESDNQEVRKNAFEAMYGTYDKFKNTFASTL
SGTVKKDNFNARVRKYDSARQAALDSNNIPEQVYDNLVKTVNDNLHLLHRYVRLRKKALELDELHMYDLYTPIVKDAKME
IPYDEAKELVLKSLAPMGEGYVDIVREGYEKRWIDVQENVGKRSGAYSSGAYGTMPYILMNWQDNVNNLFTLTHEIGHSV
HSYYTRETQPYPYANYSIFVAEVASTCNEALLNDYLLKNTEDKKKKLYLLNHHLEGFRGTVFRQTMFAEFEQLIHERAAE
GEALTPELLTKLYYELNEKYFGEDIIIDEEIGLEWARIPHFYYNYYVYQYATGFSAAASLSKQILEEGEPAVERYLEFLK
AGSSDYPIEVLKKAGVDMTSSKPIEDALSVFEEVLDEMEKLLFEEQ

Nucleotide


Download         Length: 1821 bp        

>NTDB_id=929363 V1497_RS07045 WP_349410273.1 1361841..1363661(+) (pepF) [Pseudalkalibacillus sp. SCS-8]
ATGGCAGAACAAGCAGTAAAATCACTTCCTAAAAGAGAAGAAATACCAGTTAAGGATACGTGGGATCTTGAAGCTATTTT
TGAAACTGATGAGGTATGGGAGGCTGAATTCAAGAAAATAAAAGAGTTGATCCCTCAAATTGATCAGTATCAAGGAAAGC
TTGGAGAATCAGCAGATGTTTTGTATGAAGCTTTACAATTACAGAATGAAATCACAATGCGTTTAGGAAAGCTCTATACA
TATGCTCATATGCGTTATGATCAAGACACGACAAATTCATTTTATCAAGGGTTGAATGACCGTGCTTCATCTTTAGCAAC
TGAAACGAGCAGCCACCTTTCATTCATTGTGCCGGAAATCCTTTCGCTTGAAGAAAGTATTATCCGCTCTTTCGTTGAAG
AAAAAGAAGAATTGAAGCTTTATGAACATATGCTTGATGAAATCAATCGAAGTCGACCGCACGTCCTTTCCCAAAAGGAG
GAAGCACTTCTTGCAGGAGTCAGTGAGGTTACAAACAGCTCCAGTAATACTTTTGGAATGCTGAATAATGCGGATATGAA
ATTTCCGACGATCAAGGATGAAAATGGGGAAGAAGTCGAAATAACGCATGGCCGTTATATCAGATTCTTAGAAAGTGATA
ATCAAGAAGTCCGCAAGAATGCCTTTGAGGCAATGTACGGTACGTATGATAAGTTCAAGAATACATTTGCTAGTACCTTG
AGTGGGACGGTCAAGAAAGACAACTTTAATGCACGAGTAAGAAAATACGATTCTGCGAGACAGGCAGCGTTGGATTCGAA
CAATATTCCAGAACAGGTCTACGATAATCTGGTTAAAACGGTGAACGATAATCTTCATCTGTTGCATCGTTATGTGAGGC
TCCGTAAGAAAGCTCTGGAGCTTGATGAGCTTCATATGTATGACCTTTATACCCCGATTGTGAAGGATGCTAAGATGGAA
ATTCCTTATGATGAAGCGAAGGAGCTTGTCCTGAAGAGTCTTGCACCGATGGGTGAAGGGTATGTCGATATCGTACGAGA
AGGCTACGAGAAGAGATGGATCGATGTACAAGAGAATGTTGGTAAGCGAAGTGGTGCCTATTCTTCTGGAGCGTACGGAA
CGATGCCATACATCTTGATGAACTGGCAGGATAACGTGAATAATTTGTTCACACTTACTCACGAAATCGGTCACTCCGTG
CACAGCTATTACACAAGGGAAACACAGCCATATCCATATGCGAACTATTCCATTTTTGTCGCAGAGGTTGCTTCCACGTG
TAATGAAGCATTGCTGAACGATTACTTGCTGAAAAATACTGAAGATAAGAAGAAAAAATTATACTTATTGAATCATCATC
TTGAAGGATTCCGTGGAACTGTCTTCCGCCAAACGATGTTTGCAGAATTCGAACAGTTGATCCATGAACGTGCGGCTGAA
GGTGAAGCGTTGACACCTGAATTATTGACAAAGCTATATTATGAGTTGAATGAAAAATACTTCGGAGAAGATATCATCAT
CGATGAAGAAATTGGATTAGAGTGGGCAAGAATTCCTCACTTCTACTACAATTACTATGTCTATCAATATGCAACTGGAT
TCAGTGCTGCCGCTTCCCTTTCTAAACAAATTCTTGAAGAGGGAGAACCAGCAGTCGAACGCTACCTCGAATTCTTGAAG
GCAGGAAGCTCGGATTATCCGATCGAAGTCTTGAAAAAGGCAGGCGTGGATATGACAAGCAGTAAACCAATCGAAGACGC
ACTATCTGTGTTTGAGGAAGTATTGGATGAAATGGAAAAATTGCTGTTTGAAGAACAATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(119-188)

Peptidase family M3 (Peptidase_M3)

(210-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.239

97.525

0.48