Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VJ143_RS19950 Genome accession   NZ_CP142740
Coordinates   4272505..4274676 (-) Length   723 a.a.
NCBI ID   WP_151956404.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4267505..4279676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS19935 (VJ143_19945) - 4269927..4270793 (-) 867 WP_224964374.1 hypothetical protein -
  VJ143_RS19940 (VJ143_19950) aroB 4270810..4271889 (-) 1080 WP_224964375.1 3-dehydroquinate synthase -
  VJ143_RS19945 (VJ143_19955) aroK 4271926..4272468 (-) 543 WP_004725433.1 shikimate kinase AroK -
  VJ143_RS19950 (VJ143_19960) pilQ 4272505..4274676 (-) 2172 WP_151956404.1 type IV pilus secretin PilQ family protein Machinery gene
  VJ143_RS19955 (VJ143_19965) comL 4274697..4275227 (-) 531 WP_151956403.1 pilus assembly protein PilP Machinery gene
  VJ143_RS19960 (VJ143_19970) pilO 4275224..4275970 (-) 747 WP_151956402.1 type 4a pilus biogenesis protein PilO Machinery gene
  VJ143_RS19965 (VJ143_19975) pilN 4275967..4276608 (-) 642 WP_056517486.1 PilN domain-containing protein Machinery gene
  VJ143_RS19970 (VJ143_19980) comM 4276608..4277666 (-) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 723 a.a.        Molecular weight: 78521.07 Da        Isoelectric Point: 8.1446

>NTDB_id=926659 VJ143_RS19950 WP_151956404.1 4272505..4274676(-) (pilQ) [Acinetobacter guillouiae strain 13-3]
MKKSLKNIFNGDGKFMNSQLRQFTMAAVSIAIMQVATAQTTMTNIVPMKIPGQGTEIRVMFNGLPPQPQAYQLDNPSRLI
LDFDQAKQTINQSSIAVASEEASTVDIAADDQRSRLTVNLKNSGSFTTRVEGNTFILKINNANQAAALPTYAASTLNKQN
QGIADIGFQRGNAGEGQVIVNLSGANTPVDVQQQGSKVIIRTFGNKIPAHLIRRLNVNDFATPVSSVDAYNDGSNGVITI
QSAGSYEYMAFQAENKLTVSLKRPVENKVNRPSSSQSYTGKKISLDFQDIEVRRVLQLLADFTSINMVAADSVQGNITLR
LKDVPWDQALDIILKTKNLDKRRNGSVIWIAPVTELIKAEEDEAKAIAQSIKLAPIQTEYIQLSYAKVAEVLKLLEDSRN
PKGAQANGTNNTDSLALESLLSSRGSAVADTRTNTLIINDTANNIDKVRKMIDLLDVSVKQVMVEARIVRATTDFTKEMG
VKWGILSQGITKNNDLLVGGSDTTLWDLKTPSDDGKYTITRPDNLNVDLGVTTAGASKIAFGLISLSDFMLDLELSALQS
DGYGEVISTPKVMTADKQKAKVASGQQIPYQTTSTAGGTATATTSFKDALLSLDVTPSITPEGKVQMQLNITSDSRGGVA
PNGEVILNKNEINTNVLVDNGETVVLGGIFEQENTTNQVKVPFLGDIPYLGRLFRKDAKTENKRELLIFVTPRIVNDSRT
RNH

Nucleotide


Download         Length: 2172 bp        

>NTDB_id=926659 VJ143_RS19950 WP_151956404.1 4272505..4274676(-) (pilQ) [Acinetobacter guillouiae strain 13-3]
ATGAAAAAGAGTTTGAAAAATATCTTTAACGGGGATGGTAAGTTTATGAATAGTCAACTTCGTCAATTTACTATGGCGGC
AGTGTCAATTGCGATTATGCAGGTTGCAACAGCGCAAACAACCATGACCAATATTGTACCGATGAAAATACCGGGGCAAG
GTACAGAAATTCGTGTGATGTTTAATGGCTTACCGCCACAGCCTCAAGCCTATCAATTGGATAATCCATCTCGACTGATT
TTGGATTTTGATCAGGCGAAGCAAACGATCAATCAGTCGTCTATTGCTGTGGCAAGTGAAGAAGCGTCGACGGTGGATAT
TGCTGCCGATGATCAACGTTCACGCTTAACGGTAAATTTAAAAAATAGTGGTTCTTTTACAACACGTGTTGAAGGGAATA
CCTTTATTTTAAAGATTAACAATGCCAATCAAGCTGCTGCTTTACCGACTTATGCAGCATCTACACTGAATAAGCAAAAT
CAAGGCATCGCAGATATCGGTTTCCAGCGTGGCAATGCGGGTGAGGGTCAAGTTATTGTAAATCTGTCTGGTGCAAATAC
ACCTGTAGATGTACAACAACAGGGCAGTAAAGTTATTATTCGAACCTTTGGGAATAAAATTCCAGCACATTTAATTCGTC
GTTTAAATGTCAATGATTTTGCAACCCCAGTTTCTTCTGTGGATGCTTATAATGACGGTTCCAATGGCGTCATTACCATT
CAATCTGCGGGTAGCTATGAATATATGGCTTTCCAAGCGGAAAACAAATTGACCGTGAGTTTAAAGCGTCCTGTAGAAAA
TAAGGTAAATCGCCCAAGTTCAAGTCAGTCTTATACGGGTAAGAAAATCTCGCTTGATTTTCAAGATATCGAAGTACGCC
GTGTGCTACAGCTACTTGCTGATTTTACCAGTATTAATATGGTGGCTGCAGATTCGGTTCAAGGTAATATCACTTTACGT
CTGAAAGATGTACCTTGGGATCAGGCGCTAGATATCATTTTAAAAACCAAGAATTTGGATAAGCGCCGTAATGGGAGTGT
GATTTGGATTGCACCTGTCACCGAGCTGATTAAAGCTGAAGAAGATGAAGCCAAAGCAATTGCACAAAGCATTAAGTTGG
CACCAATTCAAACAGAATATATACAACTCAGTTATGCAAAAGTTGCCGAGGTTCTAAAGTTACTCGAAGACTCTAGAAAT
CCTAAAGGTGCACAAGCAAATGGTACCAATAACACAGATTCTTTAGCTTTGGAAAGTCTACTCAGCTCAAGAGGGAGTGC
TGTTGCAGATACACGAACAAATACATTAATTATTAATGATACTGCAAATAATATTGATAAAGTTCGTAAAATGATTGATT
TACTTGATGTTTCGGTAAAGCAAGTCATGGTTGAAGCACGTATTGTTCGGGCAACAACAGATTTTACCAAAGAAATGGGG
GTGAAATGGGGAATTTTATCGCAAGGGATTACCAAGAATAATGATTTATTGGTTGGTGGTAGTGATACGACATTATGGGA
CTTAAAAACCCCGAGTGATGATGGGAAATATACCATTACTCGGCCCGATAATTTAAACGTAGACCTTGGCGTTACTACGG
CTGGGGCAAGTAAAATCGCATTTGGTCTAATTAGTCTTTCGGATTTTATGTTGGACCTAGAGTTGTCGGCTTTACAATCT
GATGGCTATGGTGAAGTGATTTCAACGCCAAAAGTGATGACCGCAGATAAACAAAAAGCCAAAGTTGCTTCGGGTCAACA
AATTCCTTACCAGACTACATCAACAGCGGGTGGTACAGCTACAGCGACAACCTCATTTAAAGATGCCTTGCTCAGTCTGG
ATGTTACACCAAGTATTACCCCAGAAGGGAAAGTACAAATGCAGCTGAATATTACCAGTGATTCACGTGGTGGGGTGGCA
CCGAATGGTGAAGTTATTCTGAATAAAAATGAAATCAATACCAATGTGTTGGTTGATAATGGTGAAACCGTGGTATTAGG
TGGTATTTTTGAACAAGAAAATACCACGAACCAAGTCAAAGTCCCATTTTTAGGCGATATTCCTTATTTAGGACGATTGT
TCCGTAAGGATGCCAAAACAGAGAATAAACGAGAGTTACTAATCTTTGTGACACCAAGAATTGTTAATGACAGTCGTACC
AGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(379-461)

AMIN domain (AMIN)

(55-137)

Bacterial type II and III secretion system protein (Secretin)

(557-715)

Secretin and TonB N terminus short domain (STN)

(310-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

71.939

100

0.723
  pilQ Acinetobacter baumannii strain A118

71.939

100

0.723
  comQ Acinetobacter baylyi ADP1

69.944

98.479

0.689
  pilQ Pseudomonas aeruginosa PAK

39.008

100

0.402