Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VJ143_RS19955 Genome accession   NZ_CP142740
Coordinates   4274697..4275227 (-) Length   176 a.a.
NCBI ID   WP_151956403.1    Uniprot ID   -
Organism   Acinetobacter guillouiae strain 13-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4269697..4280227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VJ143_RS19935 (VJ143_19945) - 4269927..4270793 (-) 867 WP_224964374.1 hypothetical protein -
  VJ143_RS19940 (VJ143_19950) aroB 4270810..4271889 (-) 1080 WP_224964375.1 3-dehydroquinate synthase -
  VJ143_RS19945 (VJ143_19955) aroK 4271926..4272468 (-) 543 WP_004725433.1 shikimate kinase AroK -
  VJ143_RS19950 (VJ143_19960) pilQ 4272505..4274676 (-) 2172 WP_151956404.1 type IV pilus secretin PilQ family protein Machinery gene
  VJ143_RS19955 (VJ143_19965) comL 4274697..4275227 (-) 531 WP_151956403.1 pilus assembly protein PilP Machinery gene
  VJ143_RS19960 (VJ143_19970) pilO 4275224..4275970 (-) 747 WP_151956402.1 type 4a pilus biogenesis protein PilO Machinery gene
  VJ143_RS19965 (VJ143_19975) pilN 4275967..4276608 (-) 642 WP_056517486.1 PilN domain-containing protein Machinery gene
  VJ143_RS19970 (VJ143_19980) comM 4276608..4277666 (-) 1059 WP_004816660.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19544.78 Da        Isoelectric Point: 7.7770

>NTDB_id=926660 VJ143_RS19955 WP_151956403.1 4274697..4275227(-) (comL) [Acinetobacter guillouiae strain 13-3]
MKQLNKIVCGILFAMLLVGCDSRIDAVNQEMANIRNQQPLPIEPAPVFNPVPSFNYSAQQLRSPFLPNSLANELKIMSGK
RVYPNFSRQPQPLESYPLESLTLKGSMKGAVGQIVGLIKTPDGEIERVQLGNYMGMNQGRIIEITPTRIDLLEIVPDGRD
GYIERPRSLVLIGPID

Nucleotide


Download         Length: 531 bp        

>NTDB_id=926660 VJ143_RS19955 WP_151956403.1 4274697..4275227(-) (comL) [Acinetobacter guillouiae strain 13-3]
ATGAAACAGCTTAATAAAATAGTTTGTGGAATCTTATTTGCGATGCTGTTGGTGGGGTGCGATTCTAGAATTGATGCCGT
TAATCAAGAAATGGCAAATATTAGAAATCAGCAACCATTGCCGATTGAACCTGCGCCAGTATTTAATCCAGTGCCTAGTT
TTAATTATTCTGCTCAACAGTTACGCAGCCCATTTTTGCCAAACTCATTGGCAAATGAATTGAAAATCATGTCAGGCAAG
CGCGTCTACCCGAATTTTTCAAGACAGCCACAGCCGCTTGAAAGCTATCCTTTAGAGTCGTTAACACTGAAAGGAAGTAT
GAAAGGGGCTGTTGGACAGATCGTGGGTTTGATCAAAACACCAGATGGTGAGATTGAGCGGGTACAACTTGGCAACTACA
TGGGTATGAATCAGGGGCGAATTATTGAAATTACGCCGACCCGTATTGATTTATTGGAAATTGTTCCAGATGGTCGAGAC
GGTTATATAGAAAGACCACGGAGTCTAGTTCTAATCGGTCCAATAGATTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(28-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Acinetobacter baylyi ADP1

75.294

96.591

0.727
  pilP Acinetobacter baumannii D1279779

73.256

97.727

0.716