Detailed information NTG0925593

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AB5J54_RS06350
• Genome accession: NZ_CP163444
• Coordinates: 1386100..1386717 (+)
• Length: 205 a.a.
• NCBI ID: WP_369142914.1
• Uniprot ID: -
• Organism: Streptomyces sp. R44
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1381100..1391717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J54_RS06320 (AB5J54_06320)	-	1381399..1383120 (-)	1722	WP_369142907.1	urease subunit alpha	-
AB5J54_RS06325 (AB5J54_06325)	-	1383113..1383454 (-)	342	WP_369142908.1	urease subunit beta	-
AB5J54_RS06330 (AB5J54_06330)	-	1383468..1383770 (-)	303	WP_369142909.1	urease subunit gamma	-
AB5J54_RS06335 (AB5J54_06335)	-	1383934..1384566 (-)	633	WP_369142910.1	TetR/AcrR family transcriptional regulator	-
AB5J54_RS06340 (AB5J54_06340)	-	1384671..1385672 (+)	1002	WP_369142911.1	ABC transporter permease	-
AB5J54_RS06345 (AB5J54_06345)	-	1385758..1386036 (-)	279	WP_369142912.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AB5J54_RS06350 (AB5J54_06350)	clpP	1386100..1386717 (+)	618	WP_369142914.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J54_RS06355 (AB5J54_06355)	-	1386725..1387030 (+)	306	WP_041128054.1	hypothetical protein	-
AB5J54_RS06360 (AB5J54_06360)	-	1387557..1388030 (+)	474	WP_369142915.1	C40 family peptidase	-
AB5J54_RS06365 (AB5J54_06365)	-	1388100..1388537 (-)	438	WP_369142916.1	ATP-binding protein	-
AB5J54_RS06370 (AB5J54_06370)	-	1388708..1389940 (-)	1233	WP_369142917.1	8-amino-7-oxononanoate synthase	-
AB5J54_RS06375 (AB5J54_06375)	bioB	1390084..1391313 (+)	1230	WP_369142918.1	biotin synthase BioB	-

Sequence

Protein

• Length: 205 a.a.
• Molecular weight: 22186.19 Da
• Isoelectric Point: 4.8745

>NTDB_id=925593 AB5J54_RS06350 WP_369142914.1 1386100..1386717(+) (clpP) [Streptomyces sp. R44]
MDARYVLPEFTERTSFGTRTLDPYSKLLESRIVFLGTPIDETSANDVIAQFLHLDHAAPGQDIALYINSPGGSISAMTAI
HDTMRTLSCDVETTCLGQAASTAAVLLAAGTPGKRLVLPGARITLRQPTMDEPLQGQPSDLDIHARELLRLRALVAGMLT
EYTGQERERIDADIDRLTVLDAPTAVAYGLVDHVITSRRDTGAAR

Nucleotide

• Length: 618 bp

>NTDB_id=925593 AB5J54_RS06350 WP_369142914.1 1386100..1386717(+) (clpP) [Streptomyces sp. R44]
ATGGACGCCCGCTACGTTCTGCCCGAGTTCACGGAGCGGACCAGCTTCGGAACCCGCACCCTCGACCCGTACTCGAAGCT
CCTCGAATCCCGGATCGTCTTCCTCGGCACACCCATCGACGAGACCTCGGCCAACGACGTCATCGCCCAGTTCCTGCACC
TCGATCACGCGGCCCCCGGCCAGGACATCGCGCTCTACATCAACTCCCCCGGCGGCTCCATCAGCGCCATGACCGCGATC
CACGACACGATGCGGACGCTCTCCTGCGACGTGGAGACCACCTGCCTGGGCCAGGCCGCGTCCACCGCCGCCGTCCTGCT
CGCCGCCGGCACCCCCGGCAAGCGGCTCGTCCTCCCCGGCGCCCGGATCACCCTCCGGCAGCCGACGATGGACGAGCCCC
TCCAGGGACAGCCGAGCGACCTGGACATCCACGCGCGCGAACTGCTCAGGCTGCGCGCCCTGGTGGCCGGGATGCTCACC
GAGTACACCGGCCAGGAGCGGGAGCGGATCGACGCCGACATCGACCGCCTCACCGTCCTGGACGCGCCGACGGCCGTCGC
GTACGGCCTGGTGGACCACGTCATCACGAGCCGGCGCGACACCGGCGCGGCACGGTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (18-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	43.59	95.122	0.415
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	41.799	92.195	0.385
clpP	Streptococcus pneumoniae Rx1	39.378	94.146	0.371
clpP	Streptococcus pneumoniae TIGR4	39.378	94.146	0.371
clpP	Streptococcus pneumoniae R6	39.378	94.146	0.371
clpP	Streptococcus pneumoniae D39	39.378	94.146	0.371
clpP	Lactococcus lactis subsp. cremoris KW2	38.974	95.122	0.371
clpP	Streptococcus pyogenes MGAS315	38.66	94.634	0.366
clpP	Streptococcus thermophilus LMG 18311	38.66	94.634	0.366
clpP	Streptococcus thermophilus LMD-9	38.66	94.634	0.366
clpP	Streptococcus mutans UA159	38.66	94.634	0.366
clpP	Streptococcus pyogenes JRS4	38.66	94.634	0.366