Detailed information NTG0925402

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AB5J52_RS06550
• Genome accession: NZ_CP163441
• Coordinates: 1490909..1491544 (+)
• Length: 211 a.a.
• NCBI ID: WP_369221505.1
• Uniprot ID: -
• Organism: Streptomyces sp. R39
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 1485909..1496544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J52_RS06520 (AB5J52_06520)	ureG	1486146..1486826 (-)	681	WP_234544811.1	urease accessory protein UreG	-
AB5J52_RS06525 (AB5J52_06525)	-	1487137..1487814 (-)	678	WP_369221501.1	urease accessory protein UreF	-
AB5J52_RS06530 (AB5J52_06530)	-	1487831..1489552 (-)	1722	WP_369221502.1	urease subunit alpha	-
AB5J52_RS06535 (AB5J52_06535)	-	1489545..1489856 (-)	312	WP_234544808.1	urease subunit beta	-
AB5J52_RS06540 (AB5J52_06540)	-	1489867..1490169 (-)	303	WP_369221503.1	urease subunit gamma	-
AB5J52_RS06545 (AB5J52_06545)	-	1490480..1490767 (-)	288	WP_369221504.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AB5J52_RS06550 (AB5J52_06550)	clpP	1490909..1491544 (+)	636	WP_369221505.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J52_RS06555 (AB5J52_06555)	-	1491552..1491860 (+)	309	WP_046730013.1	hypothetical protein	-
AB5J52_RS06560 (AB5J52_06560)	-	1492410..1492883 (+)	474	WP_234544805.1	C40 family peptidase	-
AB5J52_RS06565 (AB5J52_06565)	-	1492921..1493379 (-)	459	WP_234544816.1	ATP-binding protein	-
AB5J52_RS06570 (AB5J52_06570)	-	1493592..1494452 (+)	861	WP_234544804.1	helix-turn-helix transcriptional regulator	-
AB5J52_RS06575 (AB5J52_06575)	-	1494462..1494689 (+)	228	WP_369221506.1	DUF397 domain-containing protein	-
AB5J52_RS06580 (AB5J52_06580)	-	1494801..1495928 (-)	1128	WP_369221507.1	8-amino-7-oxononanoate synthase	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 22888.02 Da
• Isoelectric Point: 4.7721

>NTDB_id=925402 AB5J52_RS06550 WP_369221505.1 1490909..1491544(+) (clpP) [Streptomyces sp. R39]
MTRPSARYVLPEFTERTTAGQRTLDPYSKLLEERIVFLGTPVDETSANDVMAQLMYLEHAAPERDISLYINSPGGSFSAM
AAIYDTVQYVSCDVETICLGQAGASAAVLLAAGTPGKRSVLPGARIVLQQPSLPEPVQGQPSDLLIQAGELDRVRTLLEQ
MLARHTGRTAEQVHRDLERDLVLDAREALAYGLVDRVVPSRRSSLGLPDAG

Nucleotide

• Length: 636 bp

>NTDB_id=925402 AB5J52_RS06550 WP_369221505.1 1490909..1491544(+) (clpP) [Streptomyces sp. R39]
ATGACCCGACCGTCCGCCCGCTATGTCCTGCCCGAGTTCACGGAACGCACGACCGCGGGGCAGCGCACCCTGGATCCGTA
CTCCAAGCTGCTGGAGGAGCGGATCGTCTTCCTCGGCACGCCCGTCGACGAGACCTCGGCCAACGACGTGATGGCGCAGT
TGATGTACCTGGAGCACGCGGCTCCGGAGCGGGACATCTCGCTGTACATCAACTCCCCGGGCGGGTCGTTCAGCGCGATG
GCCGCGATCTACGACACGGTCCAGTACGTGAGCTGCGACGTGGAGACGATCTGCCTCGGGCAGGCCGGGGCGTCGGCGGC
GGTCCTGCTCGCCGCCGGCACGCCGGGCAAGCGGTCCGTGCTGCCCGGCGCGCGCATCGTGCTCCAACAGCCGTCGCTGC
CGGAACCGGTGCAGGGCCAGCCGAGTGATCTGCTCATCCAGGCCGGGGAGTTGGACCGGGTCCGGACACTGCTCGAACAG
ATGCTCGCCCGGCACACCGGGCGCACGGCGGAGCAGGTGCACCGGGACCTGGAGCGGGACCTGGTCCTGGACGCGCGAGA
AGCGCTGGCGTACGGCCTGGTGGACCGGGTCGTACCCAGCCGCCGGTCCTCGCTCGGCCTGCCGGACGCGGGGTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (20-199)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	43.684	90.047	0.393
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	42.105	90.047	0.379
clpP	Streptococcus pyogenes JRS4	40.933	91.469	0.374
clpP	Streptococcus pyogenes MGAS315	40.933	91.469	0.374
clpP	Streptococcus mutans UA159	40.415	91.469	0.37
clpP	Lactococcus lactis subsp. cremoris KW2	40.206	91.943	0.37
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	40.206	91.943	0.37
clpP	Streptococcus pneumoniae Rx1	39.896	91.469	0.365
clpP	Streptococcus pneumoniae D39	39.896	91.469	0.365
clpP	Streptococcus pneumoniae R6	39.896	91.469	0.365
clpP	Streptococcus pneumoniae TIGR4	39.896	91.469	0.365
clpP	Streptococcus thermophilus LMG 18311	39.175	91.943	0.36
clpP	Streptococcus thermophilus LMD-9	39.175	91.943	0.36