Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   VKP34_RS00335 Genome accession   NZ_CP142358
Coordinates   54369..54467 (+) Length   32 a.a.
NCBI ID   WP_020833188.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain 6702-99     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 49369..59467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VKP34_RS00320 (VKP34_00320) - 50232..51572 (+) 1341 WP_002986685.1 hypothetical protein -
  VKP34_RS00325 (VKP34_00325) purB 51941..53233 (+) 1293 WP_030127024.1 adenylosuccinate lyase -
  VKP34_RS00330 (VKP34_00330) comR 53367..54278 (+) 912 WP_136112109.1 helix-turn-helix domain-containing protein Regulator
  VKP34_RS00335 (VKP34_00335) comS 54369..54467 (+) 99 WP_020833188.1 quorum-sensing system DWW-type pheromone Regulator
  VKP34_RS00340 (VKP34_00340) ruvB 54498..55496 (+) 999 WP_002986679.1 Holliday junction branch migration DNA helicase RuvB -
  VKP34_RS00345 (VKP34_00345) - 55634..56071 (+) 438 WP_002994668.1 low molecular weight protein-tyrosine-phosphatase -
  VKP34_RS00350 (VKP34_00350) - 56094..56495 (+) 402 WP_012560369.1 MORN repeat-containing protein -
  VKP34_RS00355 (VKP34_00355) - 56492..58267 (+) 1776 WP_002994672.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 32 a.a.        Molecular weight: 3758.63 Da        Isoelectric Point: 10.7919

>NTDB_id=925403 VKP34_RS00335 WP_020833188.1 54369..54467(+) (comS) [Streptococcus pyogenes strain 6702-99]
MLKKVKPFLLLAAVVAFKVARVMHEFDWWNLG

Nucleotide


Download         Length: 99 bp        

>NTDB_id=925403 VKP34_RS00335 WP_020833188.1 54369..54467(+) (comS) [Streptococcus pyogenes strain 6702-99]
ATGTTAAAAAAAGTTAAGCCATTTTTACTATTAGCCGCAGTAGTTGCATTTAAAGTTGCTCGTGTAATGCATGAATTTGA
TTGGTGGAATCTTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Streptococcus pyogenes MGAS315

100

100

1
  comS Streptococcus pyogenes MGAS8232

45.161

96.875

0.437