Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB5J52_RS08430 Genome accession   NZ_CP163441
Coordinates   1903707..1905062 (-) Length   451 a.a.
NCBI ID   WP_362741449.1    Uniprot ID   -
Organism   Streptomyces sp. R39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1898707..1910062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J52_RS08410 (AB5J52_08410) alaS 1899075..1901747 (-) 2673 WP_369221752.1 alanine--tRNA ligase -
  AB5J52_RS08415 (AB5J52_08415) - 1901747..1902094 (-) 348 WP_234531722.1 hypothetical protein -
  AB5J52_RS08420 (AB5J52_08420) - 1902107..1902547 (-) 441 WP_234531917.1 DUF948 domain-containing protein -
  AB5J52_RS08425 (AB5J52_08425) rpsD 1902789..1903403 (-) 615 WP_181803162.1 30S ribosomal protein S4 -
  AB5J52_RS08430 (AB5J52_08430) rarA 1903707..1905062 (-) 1356 WP_362741449.1 replication-associated recombination protein A Machinery gene
  AB5J52_RS08435 (AB5J52_08435) - 1905118..1905774 (-) 657 WP_181803164.1 vitamin K epoxide reductase family protein -
  AB5J52_RS08440 (AB5J52_08440) - 1905931..1906254 (+) 324 Protein_1682 ATP-binding cassette domain-containing protein -
  AB5J52_RS08445 (AB5J52_08445) hisS 1906477..1907739 (-) 1263 WP_369221753.1 histidine--tRNA ligase -
  AB5J52_RS08450 (AB5J52_08450) - 1907751..1908461 (-) 711 WP_362741442.1 MBL fold metallo-hydrolase -
  AB5J52_RS08455 (AB5J52_08455) - 1908640..1909461 (+) 822 WP_369221754.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48393.81 Da        Isoelectric Point: 6.3816

>NTDB_id=925403 AB5J52_RS08430 WP_362741449.1 1903707..1905062(-) (rarA) [Streptomyces sp. R39]
MEPDLFTAAAEERQEKDPTGSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGSGGPAGPSSVILWGPPGTGKTTLAY
VVSKATDKRFVELSAITAGVKEVRAVIDGARRATGGYGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDVRGLLRRALADERGLKNAVALPEDTEQHLLRIAGGDARRALTALEAAAGAALDKAETE
IGLGTLEEVVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNSATTAIGAALEDVRKGLAGQVPPHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAEQQYAPDTVKDREYYTPTRHGSEARYADAVEWTRKHLGRRRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=925403 AB5J52_RS08430 WP_362741449.1 1903707..1905062(-) (rarA) [Streptomyces sp. R39]
GTGGAACCCGACCTGTTCACCGCCGCCGCAGAAGAACGCCAGGAGAAGGACCCGACGGGCAGCCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCACCTGCTGAAGCCGGGGTCCCCGCTGCGCAGACTGGTCGGCG
AGGGCTCCGGCGGCCCGGCCGGACCGTCGTCCGTGATCCTCTGGGGGCCGCCCGGCACCGGCAAGACGACCCTCGCGTAC
GTCGTCTCCAAGGCGACCGACAAGCGGTTCGTGGAGCTCTCCGCCATCACCGCCGGCGTCAAGGAGGTCCGCGCGGTCAT
CGACGGAGCCCGCCGCGCCACCGGGGGCTACGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTGCTCCCGGCCGTCGAGAACCGCTGGGTCACCCTGATCGCCGCGACCACCGAGAACCCGTACTTC
TCGGTGATCTCCCCCCTCCTCTCCCGCTCCCTCCTGCTCACCCTCGAACCGCTCACCGACGACGACGTCCGCGGGCTCCT
GCGCCGGGCCCTCGCCGACGAGCGCGGCCTCAAGAACGCCGTCGCCCTTCCCGAGGACACCGAGCAGCACCTGCTGCGCA
TCGCCGGAGGTGACGCCCGCCGTGCCCTGACCGCCCTGGAGGCGGCCGCCGGCGCCGCCCTCGACAAGGCCGAGACCGAG
ATCGGCCTCGGCACCCTGGAAGAGGTCGTCGACCGCGCCGCGGTCAAGTACGACCGCGACGGAGACCAGCACTACGACGT
CGCCAGCGCCCTCATCAAGTCCATCAGAGGCTCGGACGTCGACGCCGCCCTGCACTACCTGGCCCGCATGATCGAGGCCG
GCGAGGACCCCCGTTTCATCGCCCGCCGCCTGATGATCTCGGCGAGCGAGGACATCGGACTCGCGGATCCGAACGCCCTG
CCCATAGCCGTGGCCGCCGCCCAGGCCGTCGCCATGATCGGCTTCCCCGAGGCCGCCCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTCGCCCCCAAGTCCAACTCCGCGACCACCGCGATCGGCGCCGCCCTGGAGGACGTCCGCAAGGGCCTGG
CCGGCCAGGTGCCCCCGCACCTGCGCGACGGGCACTACAAGGGCGCCGCCAAACTCGGCCACGCGCAGGGCTACGTCTAC
CCGCACGACCTGCCCGAGGGCATCGCAGAGCAGCAGTACGCGCCGGACACCGTCAAGGACCGCGAGTACTACACCCCGAC
CCGGCACGGCTCGGAGGCGCGGTACGCCGACGCGGTCGAGTGGACCAGGAAGCACCTCGGTCGCAGACGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.342

96.009

0.426