Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   Llc71_RS05580 Genome accession   NZ_AP025520
Coordinates   1096127..1096531 (-) Length   134 a.a.
NCBI ID   WP_231099463.1    Uniprot ID   -
Organism   Lactococcus cremoris strain 7-1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1091127..1101531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Llc71_RS05550 (Llc71_10860) - 1091185..1092717 (+) 1533 WP_021037142.1 Nramp family divalent metal transporter -
  Llc71_RS05555 (Llc71_10870) - 1092806..1093759 (+) 954 WP_041931308.1 PhoH family protein -
  Llc71_RS05560 (Llc71_10880) - 1093829..1094317 (+) 489 WP_021037144.1 NUDIX hydrolase -
  Llc71_RS05565 (Llc71_10890) ybeY 1094547..1095035 (+) 489 WP_011835335.1 rRNA maturation RNase YbeY -
  Llc71_RS05570 (Llc71_10900) - 1095019..1095474 (+) 456 WP_011676094.1 diacylglycerol kinase -
  Llc71_RS05575 (Llc71_10910) - 1095491..1096054 (+) 564 WP_138406057.1 nucleotidyltransferase family protein -
  Llc71_RS05580 comFC 1096127..1096531 (-) 405 WP_231099463.1 phosphoribosyltransferase family protein Machinery gene
  Llc71_RS13845 - 1096777..1098069 (-) 1293 Protein_1079 DEAD/DEAH box helicase -
  Llc71_RS05595 (Llc71_10950) - 1098126..1098761 (+) 636 WP_011835331.1 YigZ family protein -
  Llc71_RS05600 (Llc71_10960) - 1098803..1099303 (+) 501 WP_011835330.1 VanZ family protein -
  Llc71_RS05605 (Llc71_10970) - 1099369..1100388 (+) 1020 WP_046124540.1 DUF475 domain-containing protein -
  Llc71_RS05610 (Llc71_10980) - 1100498..1101265 (+) 768 WP_011835328.1 5'-nucleotidase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15629.17 Da        Isoelectric Point: 9.9669

>NTDB_id=92504 Llc71_RS05580 WP_231099463.1 1096127..1096531(-) (comFC) [Lactococcus cremoris strain 7-1]
MKDYFSLYKFMGDYRLHEVFDSYFKNLSKKIPLVPIPVSPKRLQERGVNQVTAFLKDRTYLDLLEKEDTVSQSSLNREGR
LSTTNPFKLKEGEKIPKKIILIDDIYTTGTTFYHAIKTLKKANPIEITTFSLCR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=92504 Llc71_RS05580 WP_231099463.1 1096127..1096531(-) (comFC) [Lactococcus cremoris strain 7-1]
ATGAAGGATTACTTTAGTCTTTACAAATTTATGGGAGATTATCGATTACACGAAGTCTTCGATTCCTATTTTAAAAATTT
GTCCAAAAAAATTCCTCTGGTTCCTATTCCGGTTTCTCCTAAAAGATTACAAGAAAGAGGGGTTAACCAGGTAACAGCTT
TTCTAAAAGATAGAACTTATCTTGATTTGCTTGAAAAAGAGGATACTGTCAGCCAATCAAGTCTTAATCGCGAGGGACGT
TTATCAACTACCAATCCTTTTAAGTTGAAAGAGGGTGAAAAAATACCCAAAAAAATCATTTTGATTGATGATATTTATAC
AACTGGAACTACTTTTTATCATGCTATAAAAACCTTAAAGAAAGCTAATCCGATTGAAATTACAACTTTCTCACTCTGCC
GTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(77-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Lactococcus lactis subsp. cremoris KW2

97.761

100

0.978
  comFC/cflB Streptococcus mitis NCTC 12261

50.36

100

0.522
  comFC/cflB Streptococcus pneumoniae Rx1

48.921

100

0.507
  comFC/cflB Streptococcus pneumoniae R6

48.921

100

0.507
  comFC/cflB Streptococcus pneumoniae D39

48.921

100

0.507
  comFC/cflB Streptococcus pneumoniae TIGR4

48.921

100

0.507
  comFC/cflB Streptococcus mitis SK321

48.201

100

0.5
  comFC Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.388
  comFC Latilactobacillus sakei subsp. sakei 23K

35.862

100

0.388

Multiple sequence alignment