Detailed information NTG0924920

Bioinformatically predicted

Overview

• Name: clpP
• Type: Regulator
• Locus tag: AB5J58_RS14030
• Genome accession: NZ_CP163431
• Coordinates: 3049424..3050059 (-)
• Length: 211 a.a.
• NCBI ID: WP_369187695.1
• Uniprot ID: -
• Organism: Streptomyces sp. R08
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3044424..3055059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AB5J58_RS14000 (AB5J58_14000)	-	3045083..3046210 (+)	1128	WP_369187691.1	8-amino-7-oxononanoate synthase	-
AB5J58_RS14005 (AB5J58_14005)	-	3046252..3046476 (-)	225	WP_328832882.1	DUF397 domain-containing protein	-
AB5J58_RS14010 (AB5J58_14010)	-	3046486..3047355 (-)	870	WP_369187692.1	helix-turn-helix domain-containing protein	-
AB5J58_RS14015 (AB5J58_14015)	-	3047568..3048026 (+)	459	WP_369187693.1	ATP-binding protein	-
AB5J58_RS14020 (AB5J58_14020)	-	3048112..3048585 (-)	474	WP_033278230.1	C40 family peptidase	-
AB5J58_RS14025 (AB5J58_14025)	-	3049108..3049416 (-)	309	WP_369187694.1	hypothetical protein	-
AB5J58_RS14030 (AB5J58_14030)	clpP	3049424..3050059 (-)	636	WP_369187695.1	ATP-dependent Clp protease proteolytic subunit	Regulator
AB5J58_RS14035 (AB5J58_14035)	-	3050142..3050420 (+)	279	WP_352282642.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
AB5J58_RS14040 (AB5J58_14040)	-	3050624..3050926 (+)	303	WP_266766681.1	urease subunit gamma	-
AB5J58_RS14045 (AB5J58_14045)	-	3050936..3051247 (+)	312	WP_328832886.1	urease subunit beta	-
AB5J58_RS14050 (AB5J58_14050)	-	3051240..3052961 (+)	1722	WP_352112991.1	urease subunit alpha	-
AB5J58_RS14055 (AB5J58_14055)	-	3052961..3053635 (+)	675	WP_369187697.1	urease accessory protein UreF	-
AB5J58_RS14060 (AB5J58_14060)	ureG	3053877..3054554 (+)	678	WP_266766677.1	urease accessory protein UreG	-

Sequence

Protein

• Length: 211 a.a.
• Molecular weight: 22961.91 Da
• Isoelectric Point: 5.0939

>NTDB_id=924920 AB5J58_RS14030 WP_369187695.1 3049424..3050059(-) (clpP) [Streptomyces sp. R08]
MSRPSARHVLPEFTERTSAGHRTLDPYSKLLEERIVFLGTPIDDISANDVMAQFMHLEYQAPDRDISLYINSPGGSFTAM
SAIYDTLRFVSCDVETVCLGRAGSSAAVLLAAGTPGKRSALPGARVVIHQPSLPEPIQGQASDLAIQAEELARTRSQLES
LLALHTGRTVEQVSADIERDRILDSQQALEYGLVDRIVTTRKTSLAERGGE

Nucleotide

• Length: 636 bp

>NTDB_id=924920 AB5J58_RS14030 WP_369187695.1 3049424..3050059(-) (clpP) [Streptomyces sp. R08]
ATGAGCCGACCGTCCGCCCGTCATGTCCTGCCCGAGTTCACGGAGCGCACCAGCGCGGGCCACCGGACCCTCGACCCGTA
CTCGAAGCTGCTGGAGGAGCGGATCGTCTTCCTCGGGACGCCGATCGACGACATCTCGGCGAACGACGTGATGGCCCAGT
TCATGCACCTCGAATACCAGGCGCCCGACCGGGACATCTCGCTGTACATCAACTCGCCCGGCGGATCGTTCACCGCGATG
TCCGCGATCTACGACACCTTGCGGTTCGTCAGCTGTGACGTGGAGACGGTCTGCCTGGGCCGGGCCGGCTCGTCCGCGGC
GGTGCTGCTGGCGGCGGGCACGCCGGGCAAGCGGTCGGCGCTGCCGGGTGCGCGGGTGGTGATCCACCAGCCCTCACTGC
CGGAGCCGATCCAGGGTCAGGCGAGTGATCTCGCCATCCAGGCCGAGGAGTTGGCGCGCACCCGGTCCCAACTCGAGTCC
CTGCTCGCCCTGCACACGGGCCGGACGGTGGAGCAGGTGAGCGCGGACATCGAGCGCGACCGCATCCTGGACTCCCAACA
GGCCCTGGAATACGGCCTGGTGGACCGGATCGTGACGACCCGCAAGACCTCGCTCGCCGAGCGGGGCGGGGAGTGA

Domains

Predicted by InterProScan.

• Clp protease (CLP_protease) (20-200)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpP	Bacillus subtilis subsp. subtilis str. 168	46.354	90.995	0.422
clpP	Streptococcus thermophilus LMG 18311	43.299	91.943	0.398
clpP	Streptococcus thermophilus LMD-9	43.299	91.943	0.398
clpP	Streptococcus pneumoniae R6	43.523	91.469	0.398
clpP	Streptococcus pneumoniae Rx1	43.523	91.469	0.398
clpP	Streptococcus pneumoniae D39	43.523	91.469	0.398
clpP	Streptococcus pneumoniae TIGR4	43.523	91.469	0.398
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	43.915	89.573	0.393
clpP	Streptococcus pyogenes JRS4	43.158	90.047	0.389
clpP	Streptococcus pyogenes MGAS315	43.158	90.047	0.389
clpP	Streptococcus mutans UA159	43.158	90.047	0.389
clpP	Lactococcus lactis subsp. cremoris KW2	42.408	90.521	0.384
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	42.408	90.521	0.384