Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AB5J58_RS12465 Genome accession   NZ_CP163431
Coordinates   2676501..2677856 (+) Length   451 a.a.
NCBI ID   WP_369187503.1    Uniprot ID   -
Organism   Streptomyces sp. R08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2671501..2682856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB5J58_RS12440 (AB5J58_12440) vraR 2672097..2672720 (-) 624 WP_352113769.1 response regulator transcription factor Regulator
  AB5J58_RS12445 (AB5J58_12445) - 2672717..2673943 (-) 1227 WP_369187499.1 sensor histidine kinase -
  AB5J58_RS12450 (AB5J58_12450) - 2673940..2674791 (-) 852 WP_369187500.1 ABC transporter permease -
  AB5J58_RS12455 (AB5J58_12455) - 2674788..2675654 (-) 867 WP_369187501.1 ABC transporter ATP-binding protein -
  AB5J58_RS12460 (AB5J58_12460) - 2675797..2676453 (+) 657 WP_369187502.1 vitamin K epoxide reductase family protein -
  AB5J58_RS12465 (AB5J58_12465) rarA 2676501..2677856 (+) 1356 WP_369187503.1 replication-associated recombination protein A Machinery gene
  AB5J58_RS12470 (AB5J58_12470) rpsD 2678173..2678787 (+) 615 WP_019066381.1 30S ribosomal protein S4 -
  AB5J58_RS12475 (AB5J58_12475) - 2678818..2680986 (-) 2169 WP_369187504.1 AAA family ATPase -
  AB5J58_RS12480 (AB5J58_12480) - 2681193..2681639 (+) 447 WP_266766959.1 DUF948 domain-containing protein -
  AB5J58_RS12485 (AB5J58_12485) - 2681647..2681997 (+) 351 WP_266766958.1 hypothetical protein -

Sequence

Protein


Download         Length: 451 a.a.        Molecular weight: 48562.98 Da        Isoelectric Point: 6.2022

>NTDB_id=924917 AB5J58_RS12465 WP_369187503.1 2676501..2677856(+) (rarA) [Streptomyces sp. R08]
MEPDLFTAAAEERQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEGAGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIDGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SVISPLLSRSLLLTLEPLTDDDLRALLRRALSEDRGLKNAVTLPEDSENHLLRIAGGDARRALTALEAAAGAALDKGEPD
ITLQTLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDVGLADPNAL
PIAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATTAIGAAMEDVRKGHAGPVPMHLRDGHYKGAAKLGHAQGYVY
PHDLPEGIAEQQYAPEELKDREYYEPTRHGAEARYADAVEWTRQHLGRKRS

Nucleotide


Download         Length: 1356 bp        

>NTDB_id=924917 AB5J58_RS12465 WP_369187503.1 2676501..2677856(+) (rarA) [Streptomyces sp. R08]
GTGGAGCCCGACCTATTCACCGCCGCCGCGGAAGAACGCCAGGAGAAGGACCCGTCCAGCAGTCCCCTGGCGGTGCGGAT
GCGCCCGCGCACCCTCGACGAGGTGGTGGGCCAGCAGCACCTGCTGAAGCCGGGCTCACCCCTGCGCAGACTGGTCGGCG
AGGGCGCGGGCGGCCCCGCCGGACCCTCCTCGGTGATCCTCTGGGGCCCGCCCGGCACCGGCAAGACGACCCTCGCGTAC
GTCGTCTCGAAGGCGACCAACAAGCGGTTCGTGGAGCTGTCCGCGATCACCGCGGGAGTCAAGGAGGTCCGCGCGGTCAT
CGACGGCGCCCGCCGCGCCACCGGAGGCTTCGGCAAGGAGACCGTCCTCTTCCTGGACGAGATCCACCGCTTCAGCAAGG
CCCAGCAGGACTCCCTTCTCCCGGCCGTCGAGAACCGCTGGGTGACCCTGATCGCGGCGACCACGGAGAACCCGTACTTC
TCGGTGATCTCCCCGCTCCTGTCCCGCTCCCTCCTGCTCACCCTCGAACCCCTCACGGACGACGACCTGCGCGCCCTGCT
CCGCCGCGCCCTGAGCGAGGACCGCGGCCTGAAGAACGCGGTCACCCTCCCCGAGGACAGCGAGAACCACCTGCTGCGCA
TCGCCGGCGGCGACGCCCGCCGCGCGCTCACCGCCCTGGAGGCCGCCGCAGGAGCCGCTCTCGACAAGGGCGAGCCGGAC
ATCACCCTTCAGACCCTGGAGGAGACCGTCGACCGCGCGGCGGTGAAGTACGACCGCGACGGCGACCAGCACTACGACGT
GGCCAGCGCCCTCATCAAGTCGATCCGCGGCTCCGACGTCGACGCGGCCCTGCACTACCTGGCCCGCATGATCGAGGCGG
GCGAGGACCCACGCTTCATCGCCCGCCGCCTGATGATCTCCGCGAGTGAGGACGTCGGCCTGGCGGATCCGAACGCGCTG
CCGATCGCGGTCGCCGCCGCCCAGGCCGTGGCGATGATCGGCTTCCCGGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCCCTCGCCCTGGCGCCCAAGTCGAACGCGGCGACCACCGCGATCGGCGCCGCCATGGAGGACGTACGCAAGGGGCACG
CGGGCCCGGTGCCGATGCATCTGCGGGACGGGCACTACAAGGGCGCGGCCAAGCTCGGTCACGCGCAGGGGTACGTCTAC
CCGCACGACCTGCCGGAGGGCATCGCCGAGCAGCAGTACGCCCCGGAGGAGCTGAAGGACCGCGAGTACTACGAGCCGAC
CCGTCACGGGGCGGAGGCGCGGTACGCGGACGCGGTGGAGTGGACCAGGCAGCACCTTGGTCGTAAGCGGTCCTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(199-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

43.418

96.009

0.417