Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OCU50_RS09785 Genome accession   NZ_AP025514
Coordinates   2188220..2188519 (-) Length   99 a.a.
NCBI ID   WP_060468165.1    Uniprot ID   A0A109D8Y1
Organism   Vibrio toranzoniae strain CECT 7225     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2183220..2193519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS09760 - 2183648..2184865 (+) 1218 WP_060468160.1 pyridoxal phosphate-dependent aminotransferase -
  OCU50_RS09765 yfbR 2185063..2185647 (+) 585 WP_060468161.1 5'-deoxynucleotidase -
  OCU50_RS09770 - 2185702..2187045 (+) 1344 WP_060468162.1 anti-phage deoxyguanosine triphosphatase -
  OCU50_RS09775 - 2187072..2187671 (-) 600 WP_060468163.1 tRNA-uridine aminocarboxypropyltransferase -
  OCU50_RS09780 rrtA 2187681..2188229 (+) 549 WP_060468164.1 rhombosortase -
  OCU50_RS09785 comEA 2188220..2188519 (-) 300 WP_060468165.1 ComEA family DNA-binding protein Machinery gene
  OCU50_RS09790 ppiD 2188728..2190593 (-) 1866 WP_060468166.1 peptidylprolyl isomerase -
  OCU50_RS09795 - 2190816..2191088 (-) 273 WP_004736083.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10885.42 Da        Isoelectric Point: 4.3700

>NTDB_id=92402 OCU50_RS09785 WP_060468165.1 2188220..2188519(-) (comEA) [Vibrio toranzoniae strain CECT 7225]
MRTIYSTLLLSFLITLSSAVFADSPTKAELYEGIEITVNINTATAEELSALLVGIGEKKAKEIVDYRDQYGEFTTADGLV
NVKGIGEVTVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=92402 OCU50_RS09785 WP_060468165.1 2188220..2188519(-) (comEA) [Vibrio toranzoniae strain CECT 7225]
ATGCGCACAATATATTCAACACTACTTCTTTCATTTCTTATTACGCTTAGCTCCGCAGTGTTTGCAGACAGCCCAACTAA
GGCTGAGCTTTACGAAGGTATTGAGATAACGGTAAACATCAACACGGCGACAGCAGAAGAACTATCAGCTCTTCTCGTCG
GTATAGGTGAAAAAAAAGCGAAAGAGATCGTCGATTATCGAGATCAGTACGGTGAATTTACCACCGCTGACGGTTTGGTT
AATGTGAAAGGAATCGGTGAAGTGACGGTAGAAAAGAACCGTGAAAGAATTCAGCTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109D8Y1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

58.511

94.949

0.556
  comEA Vibrio cholerae C6706

54.639

97.98

0.535
  comEA Vibrio cholerae strain A1552

54.639

97.98

0.535
  comEA Vibrio campbellii strain DS40M4

56.522

92.929

0.525
  comE1/comEA Haemophilus influenzae Rd KW20

37.838

100

0.424
  comEA Acinetobacter baylyi ADP1

50

82.828

0.414

Multiple sequence alignment