Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCU50_RS01565 Genome accession   NZ_AP025514
Coordinates   338674..339237 (+) Length   187 a.a.
NCBI ID   WP_017055929.1    Uniprot ID   A0A109DAW8
Organism   Vibrio toranzoniae strain CECT 7225     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 333674..344237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS01550 uvrA 333734..336565 (-) 2832 WP_060467070.1 excinuclease ABC subunit UvrA -
  OCU50_RS01555 galU 336715..337587 (-) 873 WP_060467071.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU50_RS01560 qstR 337748..338395 (-) 648 WP_060467072.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU50_RS01565 ssb 338674..339237 (+) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  OCU50_RS01570 csrD 339414..341429 (+) 2016 WP_060467073.1 RNase E specificity factor CsrD -
  OCU50_RS01575 - 341432..342874 (+) 1443 WP_060467074.1 hypothetical protein -
  OCU50_RS01580 gspM 342874..343521 (+) 648 WP_082710314.1 type II secretion system protein GspM -
  OCU50_RS01585 - 343514..343846 (+) 333 WP_060467076.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20632.76 Da        Isoelectric Point: 5.2358

>NTDB_id=92391 OCU50_RS01565 WP_017055929.1 338674..339237(+) (ssb) [Vibrio toranzoniae strain CECT 7225]
MASRGVNKVILVGNLGNDPEIRYMPSGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQSQQQYSAPAQQQP
KAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=92391 OCU50_RS01565 WP_017055929.1 338674..339237(+) (ssb) [Vibrio toranzoniae strain CECT 7225]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAGTGG
CAGTGCTGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGAAAACTGGCGGAAGTTGCTGGTGAATACCTACGTAAAGGGTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACGACTGAAGTGGTTGTTCAAGGGTT
CAACGGTGTCATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAGCCACAACAACAGCAGCAATCACAACAACAGTACAGTGCTCCTGCTCAACAGCAGCCT
AAAGCACCCCAGCAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCGTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DAW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.894

100

0.807
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.567
  ssb Neisseria meningitidis MC58

45.455

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.455

Multiple sequence alignment