Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCU50_RS01560 Genome accession   NZ_AP025514
Coordinates   337748..338395 (-) Length   215 a.a.
NCBI ID   WP_060467072.1    Uniprot ID   A0A109DB38
Organism   Vibrio toranzoniae strain CECT 7225     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 332748..343395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU50_RS01550 uvrA 333734..336565 (-) 2832 WP_060467070.1 excinuclease ABC subunit UvrA -
  OCU50_RS01555 galU 336715..337587 (-) 873 WP_060467071.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCU50_RS01560 qstR 337748..338395 (-) 648 WP_060467072.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCU50_RS01565 ssb 338674..339237 (+) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  OCU50_RS01570 csrD 339414..341429 (+) 2016 WP_060467073.1 RNase E specificity factor CsrD -
  OCU50_RS01575 - 341432..342874 (+) 1443 WP_060467074.1 hypothetical protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24992.15 Da        Isoelectric Point: 9.9849

>NTDB_id=92390 OCU50_RS01560 WP_060467072.1 337748..338395(-) (qstR) [Vibrio toranzoniae strain CECT 7225]
MRKSRYARTLHFLCIDPSDTHLHIKAVEKHLSIPLYKMTTDDLMLVDRKQSNRILLVDYKAVPQLLAVFPNLYVIWKNNE
IILFNVPQQLPTSELLNYGVLKGLFYDSEKKIKIAKGLREVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=92390 OCU50_RS01560 WP_060467072.1 337748..338395(-) (qstR) [Vibrio toranzoniae strain CECT 7225]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATCGATCCCAGCGACACTCACCTACACATAAAAGCGGT
AGAAAAGCATTTGTCTATTCCTCTCTACAAAATGACAACGGACGATTTGATGCTAGTAGATAGGAAACAGAGCAACCGTA
TCCTACTCGTCGATTACAAAGCGGTGCCACAATTACTTGCTGTATTCCCTAACTTGTACGTTATATGGAAAAATAATGAG
ATCATTTTATTTAATGTTCCGCAACAGCTTCCTACCTCGGAACTCCTTAACTATGGCGTACTAAAAGGGTTATTTTATGA
TTCCGAGAAAAAAATCAAAATAGCAAAAGGGCTTCGAGAGGTCATTGATGGTGATAACTGGTTACCGAGAAAGGTAACAA
ACCAACTGCTATTTTATTACCGCAACATGGTCAACACCAACACGACACCCACGAATGTCGATTTAACCATCCGAGAGATC
CAAGTTATTCGCTGTCTTCAATCAGGTTCATCAAACACTCAGATAGCCGATGATTTATTTATTAGCGAGTTCACCGTCAA
ATCTCATCTCTATCAGATATTTCGCAAGTTAGCGGTTAAAAATAGAGTCCAAGCAATTGCTTGGGCAAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DB38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

53.488

100

0.535
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.521
  qstR Vibrio cholerae strain A1552

49.065

99.535

0.488

Multiple sequence alignment