Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCV12_RS16060 Genome accession   NZ_AP025506
Coordinates   3602726..3604249 (-) Length   507 a.a.
NCBI ID   WP_176680643.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain LMG 20537     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3597726..3609249
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV12_RS16035 - 3597742..3598005 (+) 264 WP_010433308.1 YihD family protein -
  OCV12_RS16040 ccoG 3598333..3599751 (+) 1419 WP_261885046.1 cytochrome c oxidase accessory protein CcoG -
  OCV12_RS16045 - 3599823..3600809 (+) 987 WP_261885967.1 serine/threonine protein kinase -
  OCV12_RS16050 - 3600865..3601464 (+) 600 WP_261885047.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCV12_RS16055 - 3601700..3602653 (+) 954 WP_261885048.1 DUF2860 domain-containing protein -
  OCV12_RS16060 comM 3602726..3604249 (-) 1524 WP_176680643.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCV12_RS16065 ilvG 3604722..3606368 (+) 1647 WP_146492788.1 acetolactate synthase 2 catalytic subunit -
  OCV12_RS16070 ilvM 3606370..3606654 (+) 285 WP_017055442.1 acetolactate synthase 2 small subunit -
  OCV12_RS16075 - 3606667..3607635 (+) 969 WP_261885049.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55624.74 Da        Isoelectric Point: 7.6368

>NTDB_id=92288 OCV12_RS16060 WP_176680643.1 3602726..3604249(-) (comM) [Vibrio pomeroyi strain LMG 20537]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIAQHEFIGELALSGELRSVKGVLPATLAADNVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEQHQVDVSEHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=92288 OCV12_RS16060 WP_176680643.1 3602726..3604249(-) (comM) [Vibrio pomeroyi strain LMG 20537]
ATGGGACTCGCGATAATTCATAGCCGAGCAAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTAGAGGTCCATATAAGCAA
CGGAATGCCCGGTTTTACGCTGGTGGGTTTGCCTGAAACGACGGTCAAGGAATCCAAAGACAGAGTAAGAAGTGCCATCA
TCAACTCTCGCTTTGAATTTCCCTCGAAAAGAATCACGGTCAACCTTGCACCTGCTGATTTACCCAAAGAGGGCGGCCGT
TTTGACCTGCCAATCGCACTAGGGATCTTGGTGGCATCCGATCAGCTACCCACATCTAAAATAGCTCAACATGAATTCAT
CGGCGAATTGGCATTGTCAGGAGAGTTGCGTTCAGTGAAAGGAGTACTACCCGCAACACTCGCTGCTGATAACGTCGAAC
GTTGCTTGGTTGTGCCACATCACAATGGCGATCAGGCAGCCTTAGTCGGTAAGGGAGCGCATAAGTCTGCACAAACCCTG
TTAGAAGTTTGCGCAGACATGTGTGGTCAGGCTCAGCTTGGTTTGTATCGGACAGAGCAACATCAAGTTGATGTGTCTGA
GCATCGTGACCTACAAGATATTATTGGTCAGCAGCAAGGCAAGCGAGCGTTGGAAATAGCCGCGGCTGGCAACCATAACT
TATTGTTCCTTGGTCCTCCCGGAACGGGCAAGACCATGCTCGCTTCTCGACTACGTGACTTATTACCTGAAATGAGTGAT
GACGAGGCGATGGAAACCGCTTCGGTGGCTTCGTTAACACAGCAAGAGATCAATCAATACAACTGGAAGCAGAGGCCATT
TCGTTCGCCTCACCATTCGAGTTCAATGGCGGCACTGGTCGGTGGTGGCTCAGTTCCTCGCCCCGGCGAGATCTCTCTGG
CGCATAACGGATTACTATTTCTGGATGAAATGCCTGAGTTTGAGCGCAAGGTGCTTGATTCATTGCGAGAGCCGCTAGAG
TCGGGCGAGATTATTATTTCACGAGTGGCAGGTAAGACTCGTTTCCCTGCGCGCTTTCAGTTGGTCGGTGCCTTGAATCC
AAGTCCGACTGGTTATTACGAAGGCAATCAAGCACGAGCCAATCCGCAGATAATTTTGCGCTATCTCAACCGATTGTCTG
GGCCGTTGCTTGATAGGTTTGATATGTCATTAGAGATCCCACTACTTCCCAAAGGGATGTTGGCTGAAGGTGGCGATCGT
GGTGAAACCACTCAAGTGGTAAAGCAAAGGGTCAAACAAGCGCGTCAGTTAATGTTGTCTAGGAACCATAAATCGAATGC
GTTACTAGGAAGTCGAGAAATTGAAAAATATTGCCCACTTCGACGTGAAGATGCGGAGTTTCTTGAAACCGCGCTGCATC
GGTTGGGTTTATCGATTCGTGCTTATCATCGAATCATCAAGGTCGCACGCACTATCGCGGATCTGGATGGTAATGAACAG
ATTGAGAAGAAGCATTTATCGGAAGCGCTGGGCTATCGAGCTATGGATCGCTTGCTGAAACAGCTCACGGCTCAGGCGGT
GTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Vibrio campbellii strain DS40M4

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.589

97.83

0.475
  comM Legionella pneumophila strain ERS1305867

48.589

97.83

0.475
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.074

100

0.424

Multiple sequence alignment