Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   OCU78_RS14395 Genome accession   NZ_AP025490
Coordinates   3259698..3261221 (-) Length   507 a.a.
NCBI ID   WP_137375407.1    Uniprot ID   -
Organism   Vibrio gallaecicus strain CECT 7244     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3254698..3266221
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU78_RS14370 - 3254698..3254961 (+) 264 WP_137375403.1 YihD family protein -
  OCU78_RS14375 ccoG 3255295..3256713 (+) 1419 WP_137375404.1 cytochrome c oxidase accessory protein CcoG -
  OCU78_RS14380 - 3256761..3257747 (+) 987 WP_137375456.1 serine/threonine protein kinase -
  OCU78_RS14385 - 3257817..3258416 (+) 600 WP_137375405.1 thiol:disulfide interchange protein DsbA/DsbL -
  OCU78_RS14390 - 3258662..3259618 (+) 957 WP_137375406.1 DUF2860 domain-containing protein -
  OCU78_RS14395 comM 3259698..3261221 (-) 1524 WP_137375407.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  OCU78_RS14400 ilvG 3261691..3263337 (+) 1647 WP_137375408.1 acetolactate synthase 2 catalytic subunit -
  OCU78_RS14405 ilvM 3263339..3263623 (+) 285 WP_137375409.1 acetolactate synthase 2 small subunit -
  OCU78_RS14410 - 3263635..3264603 (+) 969 WP_137375410.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55125.55 Da        Isoelectric Point: 7.5497

>NTDB_id=92072 OCU78_RS14395 WP_137375407.1 3259698..3261221(-) (comM) [Vibrio gallaecicus strain CECT 7244]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVREAKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPHSTLADSEFIGELALSGELRPVKGVLPATLAADKVQRVLVVPHANGDQAALVGKGQHKSAQSL
LEVCADICGQQALGLHQTAQMMLDDISSRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPQMND
QEALETASVASLTQQEINQHNWKKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQTRANPQIILRYLNKLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTEVVRKRVALARELMMKRSNKSNALLGSREIDKYCPLQLCDAEFLESALHRLGLSIRAYHRIIKVARTIADLEGCID
IEKKHLAEALGYRAMDRLLKQLTAQSV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=92072 OCU78_RS14395 WP_137375407.1 3259698..3261221(-) (comM) [Vibrio gallaecicus strain CECT 7244]
ATGGGTCTCGCGATAATTCATAGTCGAGCAAGTGTTGGGGTGGAAGCACCAGAAGTGACGGTTGAGGTGCATATTAGCAA
TGGTATGCCAGGTTTTACTTTGGTCGGTCTGCCTGAAACTACCGTTCGAGAGGCTAAAGACAGAGTAAGAAGTGCAATCA
TAAACTCGCGCTTTGAGTTTCCGGCTAAGCGGATCACTGTTAACCTCGCTCCTGCCGATTTACCGAAAGAAGGCGGACGG
TTTGATTTACCTATCGCATTAGGGATTTTGGTTGCTTCTGATCAGCTGCCCCATTCGACTTTAGCAGATTCAGAGTTTAT
TGGAGAACTTGCGTTATCAGGGGAATTAAGACCCGTTAAAGGCGTCCTTCCTGCTACTTTGGCGGCGGATAAAGTTCAAC
GTGTCTTAGTCGTTCCTCATGCCAATGGCGATCAAGCCGCCTTAGTTGGTAAAGGGCAGCACAAGTCTGCACAAAGTTTA
TTGGAAGTTTGTGCTGATATATGTGGTCAACAAGCTTTAGGTTTGCATCAAACCGCTCAAATGATGTTAGATGATATATC
TTCACGAGACTTGCAAGATATTATCGGTCAGCAGCAAGGAAAGCGCGCCTTAGAAATTGCGGCAGCAGGTAATCATAATT
TACTTTTTCTTGGTCCTCCCGGTACAGGCAAAACCATGCTTGCTTCCCGGCTATGTGACTTATTACCTCAAATGAATGAT
CAAGAAGCGCTAGAAACTGCTTCTGTTGCTTCATTAACTCAGCAAGAAATTAATCAGCATAATTGGAAAAAACGACCATT
TCGATCTCCGCACCACTCTAGTTCTATGGCTGCCTTGGTAGGAGGCGGTTCTATCCCAAGACCTGGTGAAATATCTTTGG
CTCATAATGGGTTGTTATTTTTAGATGAGATGCCTGAATTTGACAGGAAAGTTCTCGACTCTTTAAGAGAGCCATTAGAG
TCTGGTGAAATTATTATTTCGAGAGCGGCAGGTAAGACTCGATTCCCTGCTCGGTTTCAATTGGTAGGCGCATTAAACCC
CAGCCCTACTGGATACTATGAGGGGAATCAAACCAGAGCAAATCCGCAGATCATTTTACGCTATTTGAATAAACTGTCAG
GACCATTGTTGGATCGTTTTGATATGTCATTAGAAATTCCATTGCTGCCTAAAGGAATGCTCGCGGAAGGTGGAGATAGA
GGTGAAACCACAGAGGTTGTGAGAAAAAGAGTGGCGTTAGCAAGAGAATTAATGATGAAGCGCAGTAATAAGTCTAATGC
ATTACTGGGTAGCCGTGAAATTGATAAATATTGTCCCTTACAGCTCTGTGATGCTGAGTTTCTAGAAAGTGCTTTGCATC
GTTTAGGTTTATCTATTCGGGCATATCATCGAATCATCAAAGTGGCGAGAACCATTGCTGATTTGGAAGGGTGTATTGAT
ATTGAAAAGAAACATTTAGCTGAAGCGTTGGGATACCGCGCTATGGATAGATTATTGAAACAGTTAACGGCGCAGTCTGT
TTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

83.037

100

0.83
  comM Vibrio cholerae strain A1552

82.84

100

0.828
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

49.095

98.028

0.481
  comM Legionella pneumophila strain ERS1305867

49.095

98.028

0.481
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.222

100

0.434

Multiple sequence alignment