Detailed information NTG0918780

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: VNN36_RS10685
• Genome accession: NZ_CP141717
• Coordinates: 2068047..2068916 (+)
• Length: 289 a.a.
• NCBI ID: WP_339012831.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain R22-8
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 2063047..2073916

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN36_RS10665 (VNN36_10665)	-	2063375..2063995 (+)	621	WP_004257227.1	GntR family transcriptional regulator	-
VNN36_RS10670 (VNN36_10670)	-	2064200..2065402 (+)	1203	WP_014024780.1	glycine betaine/L-proline ABC transporter ATP-binding protein	-
VNN36_RS10675 (VNN36_10675)	-	2065395..2067119 (+)	1725	WP_339012825.1	ABC transporter permease/substrate binding protein	-
VNN36_RS10680 (VNN36_10680)	budA	2067261..2067959 (+)	699	WP_339012828.1	acetolactate decarboxylase	-
VNN36_RS10685 (VNN36_10685)	dprA	2068047..2068916 (+)	870	WP_339012831.1	DNA-processing protein DprA	Machinery gene
VNN36_RS10690 (VNN36_10690)	topA	2069106..2071256 (+)	2151	WP_339012834.1	type I DNA topoisomerase	-
VNN36_RS10695 (VNN36_10695)	trmFO	2071301..2072644 (+)	1344	WP_042217745.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
VNN36_RS10700 (VNN36_10700)	-	2072727..2072948 (-)	222	WP_339012836.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32874.06 Da
• Isoelectric Point: 9.5626

>NTDB_id=918780 VNN36_RS10685 WP_339012831.1 2068047..2068916(+) (dprA) [Lactococcus garvieae strain R22-8]
MIRNFEILRLKKAGMSNLGILKLIDYQERHEAKLTLRQLARIAEVKAVPNFIESYKSQDVKRLREQYKTFPSFSILDDIY
PEWLKEMYNPPTLLFYQGNLKLLNFPKLGFVGSREMSKEAPKITYKLIEELKQSFVIVSGLARGVDTSSHVAAIKQQTPT
IAVIGNGLDISYPKENRKLQEYLATHELVLSEYLVGEPPLKFHFPERNRIIAGLSRGIVVIEAKQRSGSLITSRYALEGN
REVFAVPGDILNRNASGCNQLIQQGAAKLITHGQDILDEFYLYEGNFLP

Nucleotide

• Length: 870 bp

>NTDB_id=918780 VNN36_RS10685 WP_339012831.1 2068047..2068916(+) (dprA) [Lactococcus garvieae strain R22-8]
ATGATTAGAAATTTTGAAATATTGCGTTTGAAAAAAGCAGGAATGTCGAATCTAGGGATTTTGAAACTGATTGACTATCA
AGAGAGGCATGAAGCAAAACTTACTTTACGACAGTTAGCGAGGATTGCAGAAGTCAAAGCTGTTCCTAATTTTATTGAGA
GTTACAAGAGTCAGGATGTGAAACGACTTCGAGAGCAATATAAGACCTTCCCCTCCTTTTCCATCTTAGACGACATTTAT
CCTGAATGGCTGAAAGAAATGTATAATCCCCCGACCCTCCTTTTTTATCAAGGAAATCTTAAGTTGCTTAATTTCCCTAA
ACTCGGATTTGTCGGGAGCCGTGAAATGTCTAAGGAGGCACCTAAAATTACATACAAGCTTATTGAGGAATTAAAACAAA
GCTTTGTTATAGTGAGCGGGTTAGCACGTGGTGTTGACACTTCTAGTCATGTAGCTGCTATAAAGCAACAAACGCCAACC
ATTGCTGTCATTGGTAACGGCTTAGATATTAGTTATCCAAAAGAAAATCGTAAATTACAAGAATATTTAGCAACTCATGA
ATTGGTTTTATCAGAATACCTTGTAGGAGAGCCTCCCCTTAAGTTTCATTTTCCAGAGAGAAATAGAATTATTGCGGGTC
TTTCTCGTGGAATTGTCGTTATTGAAGCAAAGCAACGTAGCGGTAGCCTCATCACAAGTCGTTATGCCTTAGAGGGAAAT
AGAGAAGTATTTGCTGTACCTGGAGATATTTTGAACAGAAATGCCTCTGGCTGTAATCAATTAATCCAGCAAGGTGCAGC
CAAGCTTATCACTCATGGTCAAGATATTTTAGATGAATTTTATTTATATGAGGGTAATTTCCTTCCTTAA

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (74-271)

• DNA processing protein A sterile alpha motif domain (SAM_DprA) (2-63)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Lactococcus lactis subsp. cremoris KW2	63.604	97.924	0.623
dprA	Streptococcus mutans UA159	56.318	95.848	0.54
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus pneumoniae D39	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus pneumoniae R6	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus mitis SK321	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	53.405	96.54	0.516
dprA	Haemophilus influenzae Rd KW20	36.986	100	0.374