Detailed information NTG0918693

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: VNN41_RS01400
• Genome accession: NZ_CP141713
• Coordinates: 290748..291617 (-)
• Length: 289 a.a.
• NCBI ID: WP_407350612.1
• Uniprot ID: -
• Organism: Lactococcus garvieae strain VC11
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 285748..296617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VNN41_RS01385 (VNN41_01380)	-	286725..286946 (+)	222	WP_074749946.1	hypothetical protein	-
VNN41_RS01390 (VNN41_01385)	trmFO	287019..288362 (-)	1344	WP_042217745.1	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	-
VNN41_RS01395 (VNN41_01390)	topA	288409..290559 (-)	2151	WP_023888984.1	type I DNA topoisomerase	-
VNN41_RS01400 (VNN41_01395)	dprA	290748..291617 (-)	870	WP_407350612.1	DNA-processing protein DprA	Machinery gene
VNN41_RS01405 (VNN41_01400)	budA	291704..292402 (-)	699	WP_270234123.1	acetolactate decarboxylase	-
VNN41_RS01410 (VNN41_01405)	-	292544..294268 (-)	1725	WP_407350613.1	ABC transporter permease/substrate binding protein	-
VNN41_RS01415 (VNN41_01410)	-	294261..295463 (-)	1203	WP_004257230.1	glycine betaine/L-proline ABC transporter ATP-binding protein	-
VNN41_RS01420 (VNN41_01415)	-	295668..296288 (-)	621	WP_004257227.1	GntR family transcriptional regulator	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32839.04 Da
• Isoelectric Point: 9.5626

>NTDB_id=918693 VNN41_RS01400 WP_407350612.1 290748..291617(-) (dprA) [Lactococcus garvieae strain VC11]
MIRNFEILRLKKAGMSNLGILKLIDYQERHEAKLTLRQLARIAEVKAVPNFIESYKSQDVKRLREQYKTFPSFSILDDIY
PEWLKEMYNPPTLLFYQGNLKLLNFPKLGFVGSREISKEAPKITYKLIEELKQSFVIVSGLARGVDTSSHVAAIKPQTPT
IAVIGNGLDISYPKENRKLQEYLATHELVLSEYLVGEPPLKFHFPERNRIIAGLSRGIVVVEAKQRSGSLITSRYALEGN
REVFAVPGDILNRNVSGCNQLIQQGAAKLITHGQDILDEFYLYEGNFLP

Nucleotide

• Length: 870 bp

>NTDB_id=918693 VNN41_RS01400 WP_407350612.1 290748..291617(-) (dprA) [Lactococcus garvieae strain VC11]
ATGATTAGAAATTTTGAAATATTGCGTTTGAAAAAAGCAGGAATGTCGAATCTAGGGATTTTGAAACTGATTGACTATCA
AGAGAGGCATGAAGCAAAACTTACTTTACGACAGTTAGCGAGGATCGCAGAAGTCAAAGCTGTGCCTAATTTTATTGAGA
GTTACAAGAGTCAGGATGTGAAACGACTTCGAGAGCAATATAAGACCTTCCCTTCCTTTTCCATCTTAGACGACATTTAT
CCTGAATGGCTGAAAGAAATGTATAATCCCCCGACCCTCCTTTTTTATCAAGGAAATCTTAAGTTGCTTAACTTCCCTAA
ACTCGGATTTGTCGGGAGCCGTGAAATATCTAAGGAAGCACCTAAAATTACATACAAGCTTATTGAGGAATTAAAACAAA
GCTTTGTTATAGTGAGCGGGTTAGCACGTGGTGTTGACACTTCTAGTCATGTAGCTGCTATAAAGCCACAAACACCAACC
ATTGCTGTCATTGGTAACGGTTTAGATATTAGTTATCCAAAAGAAAATCGTAAATTACAAGAGTATTTAGCAACTCATGA
ATTGGTTTTATCAGAATACCTTGTAGGAGAGCCGCCCCTTAAGTTTCATTTTCCAGAGAGAAATAGAATCATTGCGGGTC
TTTCTCGTGGAATTGTCGTTGTTGAAGCAAAGCAACGTAGCGGTAGCCTCATCACAAGTCGTTATGCCTTAGAGGGAAAT
AGAGAAGTCTTTGCTGTACCTGGAGATATTTTGAACAGAAATGTCTCTGGCTGTAATCAATTAATCCAGCAAGGTGCAGC
CAAGCTTATCACTCATGGTCAAGATATTTTGGATGAATTTTATTTATATGAGGGTAATTTCCTTCCTTAA

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (74-271)

• DNA processing protein A sterile alpha motif domain (SAM_DprA) (2-63)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Lactococcus lactis subsp. cremoris KW2	63.958	97.924	0.626
dprA	Streptococcus mutans UA159	55.914	96.54	0.54
dprA/cilB/dalA	Streptococcus pneumoniae Rx1	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus pneumoniae D39	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus pneumoniae R6	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus pneumoniae TIGR4	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus mitis SK321	54.122	96.54	0.522
dprA/cilB/dalA	Streptococcus mitis NCTC 12261	53.405	96.54	0.516
dprA	Haemophilus influenzae Rd KW20	37.329	100	0.377