Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   VNN32_RS04740 Genome accession   NZ_CP141703
Coordinates   887440..887856 (+) Length   138 a.a.
NCBI ID   WP_019336004.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-74 AL-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882440..892856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN32_RS04715 (VNN32_04710) guaB 883270..884751 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  VNN32_RS04720 (VNN32_04715) rpsU 884877..885053 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN32_RS04725 (VNN32_04720) comGA 885239..886183 (+) 945 WP_046401060.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN32_RS04730 (VNN32_04725) comGB 886122..887141 (+) 1020 Protein_878 competence type IV pilus assembly protein ComGB -
  VNN32_RS04735 (VNN32_04730) comYC 887160..887465 (+) 306 WP_029343537.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN32_RS04740 (VNN32_04735) comGD 887440..887856 (+) 417 WP_019336004.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN32_RS04745 (VNN32_04740) comGE 887888..888121 (+) 234 WP_272945968.1 competence type IV pilus minor pilin ComGE -
  VNN32_RS04750 (VNN32_04745) comGF 888102..888542 (+) 441 WP_019336002.1 competence type IV pilus minor pilin ComGF -
  VNN32_RS04755 (VNN32_04750) - 888774..889619 (+) 846 WP_019336001.1 zinc ABC transporter substrate-binding protein -
  VNN32_RS04760 (VNN32_04755) - 889690..890574 (-) 885 WP_019336000.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15767.39 Da        Isoelectric Point: 9.9392

>NTDB_id=918577 VNN32_RS04740 WP_019336004.1 887440..887856(+) (comGD) [Lactococcus petauri strain R21-74 AL-1]
MQNVMYRIKALTLLESLLVLFLCSSVLFLFSGSVKQSVRIARAEIFILQFERLYKDTQRMAGLKGQQQTLSASNGTLYSH
EEVLKVPEEVEINDFSITFDQKSGNSSLQKITIFLPYQKKTISYQLEIGSGKYKKKIT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=918577 VNN32_RS04740 WP_019336004.1 887440..887856(+) (comGD) [Lactococcus petauri strain R21-74 AL-1]
ATGCAAAACGTAATGTACCGAATTAAAGCTTTGACCTTACTAGAGAGTTTACTAGTCCTTTTCCTTTGCTCTTCTGTTCT
TTTTCTCTTTTCAGGTTCGGTCAAACAAAGTGTCAGGATAGCACGCGCAGAGATTTTTATTTTACAATTTGAACGACTTT
ATAAGGATACCCAGCGTATGGCAGGATTAAAGGGACAGCAACAGACATTGAGTGCGAGTAATGGCACACTATACAGCCAC
GAGGAAGTACTGAAAGTTCCAGAGGAGGTTGAAATAAATGATTTTTCTATTACTTTTGATCAAAAATCAGGCAACTCGAG
CCTACAAAAAATTACAATATTTCTTCCTTATCAGAAAAAAACTATCTCTTATCAATTGGAAATTGGAAGCGGGAAATATA
AGAAAAAAATCACTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Lactococcus lactis subsp. cremoris KW2

49.275

100

0.493
  comYD Streptococcus mutans UA140

42.424

95.652

0.406
  comYD Streptococcus mutans UA159

42.424

95.652

0.406
  comGD/cglD Streptococcus mitis SK321

41.085

93.478

0.384
  comGD/cglD Streptococcus pneumoniae TIGR4

40.31

93.478

0.377
  comGD/cglD Streptococcus mitis NCTC 12261

39.231

94.203

0.37
  comGD/cglD Streptococcus pneumoniae Rx1

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae D39

38.76

93.478

0.362
  comGD/cglD Streptococcus pneumoniae R6

38.76

93.478

0.362