Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   VNN32_RS04735 Genome accession   NZ_CP141703
Coordinates   887160..887465 (+) Length   101 a.a.
NCBI ID   WP_029343537.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-74 AL-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 882160..892465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN32_RS04715 (VNN32_04710) guaB 883270..884751 (+) 1482 WP_003133714.1 IMP dehydrogenase -
  VNN32_RS04720 (VNN32_04715) rpsU 884877..885053 (+) 177 WP_003134539.1 30S ribosomal protein S21 -
  VNN32_RS04725 (VNN32_04720) comGA 885239..886183 (+) 945 WP_046401060.1 competence type IV pilus ATPase ComGA Machinery gene
  VNN32_RS04730 (VNN32_04725) comGB 886122..887141 (+) 1020 Protein_878 competence type IV pilus assembly protein ComGB -
  VNN32_RS04735 (VNN32_04730) comYC 887160..887465 (+) 306 WP_029343537.1 competence type IV pilus major pilin ComGC Machinery gene
  VNN32_RS04740 (VNN32_04735) comGD 887440..887856 (+) 417 WP_019336004.1 competence type IV pilus minor pilin ComGD Machinery gene
  VNN32_RS04745 (VNN32_04740) comGE 887888..888121 (+) 234 WP_272945968.1 competence type IV pilus minor pilin ComGE -
  VNN32_RS04750 (VNN32_04745) comGF 888102..888542 (+) 441 WP_019336002.1 competence type IV pilus minor pilin ComGF -
  VNN32_RS04755 (VNN32_04750) - 888774..889619 (+) 846 WP_019336001.1 zinc ABC transporter substrate-binding protein -
  VNN32_RS04760 (VNN32_04755) - 889690..890574 (-) 885 WP_019336000.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11373.35 Da        Isoelectric Point: 10.2213

>NTDB_id=918576 VNN32_RS04735 WP_029343537.1 887160..887465(+) (comYC) [Lactococcus petauri strain R21-74 AL-1]
MKKKRIKAFTLIEMLVVLLIISVLLLLFVPNLAKEKKNIQNTGQTAVVKVVEGQAELYQLDKQDSPNLGKLVSDGLITQK
QADSYNDYYTKNPNAKRNVPN

Nucleotide


Download         Length: 306 bp        

>NTDB_id=918576 VNN32_RS04735 WP_029343537.1 887160..887465(+) (comYC) [Lactococcus petauri strain R21-74 AL-1]
ATGAAAAAAAAGAGAATCAAAGCTTTTACTTTGATTGAAATGCTTGTCGTCTTACTTATTATCAGTGTGTTACTTTTATT
GTTTGTCCCAAATTTGGCTAAAGAAAAGAAGAATATCCAAAATACGGGTCAAACAGCGGTTGTTAAGGTTGTCGAAGGTC
AAGCCGAACTTTATCAACTTGATAAACAGGATAGTCCTAACTTAGGGAAGCTTGTCTCCGACGGTTTAATTACGCAAAAA
CAAGCCGATAGCTACAATGATTATTATACCAAGAACCCTAATGCAAAACGTAATGTACCGAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus mutans UA140

64.356

100

0.644
  comYC Streptococcus mutans UA159

64.356

100

0.644
  comYC Streptococcus gordonii str. Challis substr. CH1

62.745

100

0.634
  comGC/cglC Streptococcus mitis SK321

63.636

98.02

0.624
  comGC Lactococcus lactis subsp. cremoris KW2

62

99.01

0.614
  comGC/cglC Streptococcus pneumoniae D39

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae Rx1

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae R6

59.596

98.02

0.584
  comGC/cglC Streptococcus pneumoniae TIGR4

59.596

98.02

0.584
  comGC/cglC Streptococcus mitis NCTC 12261

62.637

90.099

0.564
  comYC Streptococcus suis isolate S10

56.79

80.198

0.455
  comGC Staphylococcus aureus MW2

50.633

78.218

0.396
  comGC Staphylococcus aureus N315

50.633

78.218

0.396