Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   OCV39_RS12845 Genome accession   NZ_AP025472
Coordinates   2761368..2761916 (-) Length   182 a.a.
NCBI ID   WP_017051191.1    Uniprot ID   A0A1E5D870
Organism   Vibrio cortegadensis strain CECT 7227     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2756368..2766916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS12825 - 2756749..2757075 (-) 327 WP_261888587.1 MSHA biogenesis protein MshK -
  OCV39_RS12830 pilO 2757068..2757688 (-) 621 WP_136994218.1 type 4a pilus biogenesis protein PilO -
  OCV39_RS12835 - 2757724..2759166 (-) 1443 WP_261888588.1 MSHA biogenesis protein MshI -
  OCV39_RS12840 csrD 2759178..2761172 (-) 1995 WP_113799615.1 RNase E specificity factor CsrD -
  OCV39_RS12845 ssb 2761368..2761916 (-) 549 WP_017051191.1 single-stranded DNA-binding protein Machinery gene
  OCV39_RS12850 qstR 2762190..2762840 (+) 651 WP_136994211.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV39_RS12855 galU 2762948..2763820 (+) 873 WP_113799620.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV39_RS12860 uvrA 2763961..2766786 (+) 2826 WP_017052830.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20074.15 Da        Isoelectric Point: 5.2358

>NTDB_id=91845 OCV39_RS12845 WP_017051191.1 2761368..2761916(-) (ssb) [Vibrio cortegadensis strain CECT 7227]
MASRGVNKVILVGNLGNDPEIRYMPNGSAVANITIATSESWRDKATGEPREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRGQGGAPAQGGQQQQGGWGQPQQPQQQAPQQQAPQAQQQRAPQQ
APQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=91845 OCV39_RS12845 WP_017051191.1 2761368..2761916(-) (ssb) [Vibrio cortegadensis strain CECT 7227]
ATGGCCAGCCGTGGAGTAAACAAAGTAATCTTAGTGGGCAACCTAGGTAATGACCCTGAAATTCGTTATATGCCAAATGG
TAGTGCAGTAGCGAATATCACCATTGCAACGTCTGAATCATGGCGTGATAAAGCAACAGGCGAGCCGCGTGAAAAAACAG
AATGGCACCGTGTTGCATTATTTGGAAAGCTTGCGGAAGTAGCAGGTGAGTACTTACGTAAAGGCTCACAGGTTTACATT
GAAGGTCAATTACAGACTCGTAAATGGCAAGATCAAAGTGGACAAGACCGCTACACAACAGAAGTAGTTGTACAGGGCTT
TAACGGCGTAATGCAAATGCTTGGTGGCCGTGGTCAAGGTGGCGCTCCTGCACAAGGTGGTCAGCAACAACAAGGTGGAT
GGGGACAGCCTCAGCAACCTCAACAACAGGCACCGCAGCAGCAAGCTCCACAAGCACAACAGCAACGTGCACCGCAGCAA
GCGCCACAACAAGCTCAGCCTCAGTACAATGAGCCACCAATGGATTTCGATGACGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5D870

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.032

100

0.808
  ssb Glaesserella parasuis strain SC1401

56.757

100

0.577
  ssb Neisseria gonorrhoeae MS11

46.448

100

0.467
  ssb Neisseria meningitidis MC58

45.856

99.451

0.456

Multiple sequence alignment