Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   OCV39_RS12850 Genome accession   NZ_AP025472
Coordinates   2762190..2762840 (+) Length   216 a.a.
NCBI ID   WP_136994211.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2757190..2767840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS12835 - 2757724..2759166 (-) 1443 WP_261888588.1 MSHA biogenesis protein MshI -
  OCV39_RS12840 csrD 2759178..2761172 (-) 1995 WP_113799615.1 RNase E specificity factor CsrD -
  OCV39_RS12845 ssb 2761368..2761916 (-) 549 WP_017051191.1 single-stranded DNA-binding protein Machinery gene
  OCV39_RS12850 qstR 2762190..2762840 (+) 651 WP_136994211.1 LuxR C-terminal-related transcriptional regulator Regulator
  OCV39_RS12855 galU 2762948..2763820 (+) 873 WP_113799620.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  OCV39_RS12860 uvrA 2763961..2766786 (+) 2826 WP_017052830.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24983.96 Da        Isoelectric Point: 9.5108

>NTDB_id=91846 OCV39_RS12850 WP_136994211.1 2762190..2762840(+) (qstR) [Vibrio cortegadensis strain CECT 7227]
MKNTSYTRTIYFLCLEPTLIHPDVDLIAQKLRLTIPRISPIELMEAFQSHKHKILLLDYQTHRQITQQVQGLPLTNKNFE
TILINVEKRLTTDELLTFGSLKGVFYKNDDPKIIAQGLGEIINGQNWLPRKVSSQLLHYYRHMVHSHTTPVSVDLTLREL
QILRCLQSGSSNTQIADDLFISEYTVKSHVYQIFKKLSVRNRVQAIAWANQNLLSC

Nucleotide


Download         Length: 651 bp        

>NTDB_id=91846 OCV39_RS12850 WP_136994211.1 2762190..2762840(+) (qstR) [Vibrio cortegadensis strain CECT 7227]
ATGAAAAATACCAGCTACACCAGAACGATCTACTTCCTATGCCTTGAGCCAACACTTATTCATCCAGATGTTGACCTCAT
AGCACAGAAGTTGAGGTTGACGATCCCACGAATCTCCCCCATTGAGCTTATGGAAGCTTTTCAAAGCCATAAACATAAGA
TTCTATTATTGGATTATCAAACCCATCGTCAAATTACCCAACAAGTTCAGGGTTTACCATTAACCAACAAGAATTTCGAA
ACTATTTTGATTAATGTTGAGAAACGCTTAACGACCGATGAGCTGCTCACTTTTGGCAGCCTTAAGGGCGTGTTCTATAA
AAATGATGATCCTAAAATAATAGCCCAAGGCCTTGGCGAAATTATCAATGGTCAAAATTGGTTACCAAGAAAAGTGAGCA
GTCAACTTCTACACTACTATCGCCATATGGTTCATTCTCACACCACTCCAGTCTCTGTCGATCTAACGTTAAGAGAGCTT
CAAATTCTACGTTGCTTACAGTCTGGTTCATCAAATACTCAAATTGCAGATGACCTTTTTATTAGTGAATACACCGTAAA
GTCACACGTTTATCAAATATTTAAAAAGCTCTCGGTTAGAAATAGAGTCCAAGCTATAGCCTGGGCCAACCAAAATCTTT
TATCATGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

62.15

99.074

0.616
  qstR Vibrio campbellii strain DS40M4

56.279

99.537

0.56
  qstR Vibrio parahaemolyticus RIMD 2210633

55.349

99.537

0.551

Multiple sequence alignment