Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | OCV39_RS04320 | Genome accession | NZ_AP025472 |
| Coordinates | 934301..934606 (+) | Length | 101 a.a. |
| NCBI ID | WP_371729574.1 | Uniprot ID | - |
| Organism | Vibrio cortegadensis strain CECT 7227 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 929301..939606
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCV39_RS04305 | lon | 929319..931670 (+) | 2352 | WP_261889087.1 | endopeptidase La | - |
| OCV39_RS04310 | - | 931865..932137 (+) | 273 | WP_017051274.1 | HU family DNA-binding protein | - |
| OCV39_RS04315 | ppiD | 932319..934172 (+) | 1854 | WP_113795887.1 | peptidylprolyl isomerase | - |
| OCV39_RS04320 | comEA | 934301..934606 (+) | 306 | WP_371729574.1 | ComEA family DNA-binding protein | Machinery gene |
| OCV39_RS04325 | rrtA | 934707..935270 (-) | 564 | WP_261889089.1 | rhombosortase | - |
| OCV39_RS04330 | - | 935280..935918 (+) | 639 | WP_113795888.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| OCV39_RS04335 | - | 935948..937267 (-) | 1320 | WP_261889090.1 | anti-phage deoxyguanosine triphosphatase | - |
| OCV39_RS04340 | yfbR | 937306..937920 (-) | 615 | WP_171756115.1 | 5'-deoxynucleotidase | - |
| OCV39_RS04345 | - | 938078..939292 (-) | 1215 | WP_113795891.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 11062.73 Da Isoelectric Point: 5.8525
>NTDB_id=91835 OCV39_RS04320 WP_371729574.1 934301..934606(+) (comEA) [Vibrio cortegadensis strain CECT 7227]
MNMLLRKYLLTLILAISLPISAFAAEDSTLTKHDGIEITVNINTASAEELATLLKGVGKKRAQDIVDYRKANGEFQTAEE
LTNVKGIGTSTLEKNSERIQL
MNMLLRKYLLTLILAISLPISAFAAEDSTLTKHDGIEITVNINTASAEELATLLKGVGKKRAQDIVDYRKANGEFQTAEE
LTNVKGIGTSTLEKNSERIQL
Nucleotide
Download Length: 306 bp
>NTDB_id=91835 OCV39_RS04320 WP_371729574.1 934301..934606(+) (comEA) [Vibrio cortegadensis strain CECT 7227]
TTGAATATGCTTTTACGTAAATACCTATTGACTCTGATTCTGGCGATATCATTACCCATTTCTGCTTTTGCGGCTGAAGA
TAGTACGCTCACTAAGCATGATGGCATTGAAATTACGGTGAATATTAATACCGCTTCTGCAGAGGAGCTTGCCACCTTAC
TAAAAGGTGTTGGTAAGAAGAGGGCGCAAGATATTGTTGACTATAGAAAAGCCAATGGTGAGTTTCAAACGGCTGAAGAG
TTGACGAATGTTAAAGGCATTGGAACGTCAACATTAGAAAAAAACAGTGAAAGAATACAGTTATAA
TTGAATATGCTTTTACGTAAATACCTATTGACTCTGATTCTGGCGATATCATTACCCATTTCTGCTTTTGCGGCTGAAGA
TAGTACGCTCACTAAGCATGATGGCATTGAAATTACGGTGAATATTAATACCGCTTCTGCAGAGGAGCTTGCCACCTTAC
TAAAAGGTGTTGGTAAGAAGAGGGCGCAAGATATTGTTGACTATAGAAAAGCCAATGGTGAGTTTCAAACGGCTGAAGAG
TTGACGAATGTTAAAGGCATTGGAACGTCAACATTAGAAAAAAACAGTGAAAGAATACAGTTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
60 |
94.059 |
0.564 |
| comEA | Vibrio cholerae C6706 |
54.369 |
100 |
0.554 |
| comEA | Vibrio cholerae strain A1552 |
54.369 |
100 |
0.554 |
| comEA | Vibrio campbellii strain DS40M4 |
54.737 |
94.059 |
0.515 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
39.815 |
100 |
0.426 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
38.053 |
100 |
0.426 |