Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L6439_RS27875 Genome accession   NZ_AP025344
Coordinates   6285216..6285710 (-) Length   164 a.a.
NCBI ID   WP_197256945.1    Uniprot ID   -
Organism   Paenibacillus dendritiformis strain J27TS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6280216..6290710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6439_RS27855 (PsJ27TS7_56660) - 6281731..6282657 (-) 927 WP_213471626.1 DUF2232 domain-containing protein -
  L6439_RS27860 (PsJ27TS7_56670) - 6282785..6283207 (-) 423 WP_168178526.1 CBS domain-containing protein -
  L6439_RS27865 (PsJ27TS7_56680) - 6283324..6284301 (-) 978 WP_168178525.1 LCP family protein -
  L6439_RS27870 (PsJ27TS7_56690) rpsR 6284920..6285195 (-) 276 WP_168178524.1 30S ribosomal protein S18 -
  L6439_RS27875 (PsJ27TS7_56700) ssbA 6285216..6285710 (-) 495 WP_197256945.1 single-stranded DNA-binding protein Machinery gene
  L6439_RS27880 (PsJ27TS7_56710) rpsF 6285758..6286045 (-) 288 WP_168178522.1 30S ribosomal protein S6 -
  L6439_RS27885 (PsJ27TS7_56720) - 6286322..6286516 (+) 195 WP_168178521.1 YjzC family protein -
  L6439_RS29835 - 6287016..6287171 (-) 156 WP_369009965.1 putative holin-like toxin -
  L6439_RS27895 (PsJ27TS7_56730) - 6287480..6287686 (-) 207 WP_168178520.1 DUF951 domain-containing protein -
  L6439_RS27900 (PsJ27TS7_56740) - 6287676..6288605 (-) 930 WP_168178519.1 mechanosensitive ion channel family protein -
  L6439_RS27905 (PsJ27TS7_56750) - 6288610..6288885 (-) 276 WP_213471627.1 DUF3343 domain-containing protein -
  L6439_RS27910 (PsJ27TS7_56760) yyaC 6288992..6289579 (+) 588 WP_237096674.1 spore protease YyaC -
  L6439_RS27915 (PsJ27TS7_56770) - 6289576..6290103 (-) 528 WP_213471628.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18001.76 Da        Isoelectric Point: 4.8107

>NTDB_id=91568 L6439_RS27875 WP_197256945.1 6285216..6285710(-) (ssbA) [Paenibacillus dendritiformis strain J27TS7]
MLNRVILIGRLTRDPELRYTPSGVAVTQFTLAVDRPFSNQNGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
SYDNNEGKRVYVTEVIADNVRFLESNRDSGGSRDDMGGGYGGGQPNNNSRPYGGGGSSQSRGPAADPFSDDGRPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=91568 L6439_RS27875 WP_197256945.1 6285216..6285710(-) (ssbA) [Paenibacillus dendritiformis strain J27TS7]
ATGTTGAATCGCGTGATCTTGATTGGTCGTCTAACCCGTGACCCTGAATTGCGCTATACGCCATCCGGAGTTGCCGTGAC
GCAATTTACGTTGGCGGTCGATCGTCCGTTCTCGAACCAGAATGGCGAGCGGGAGGCGGATTTCATTCCCGTGGTCACAT
GGCGGCAGTTGGCAGAGACTTGCGCCAATTATTTGCGCAAAGGTCGGCTAACGGCTGTGGAAGGCCGAATCCAAGTCCGC
AGTTACGACAACAATGAAGGGAAGCGCGTATACGTTACGGAGGTTATCGCCGATAACGTACGATTCCTGGAGTCCAACCG
CGACAGCGGAGGAAGTCGTGACGATATGGGCGGAGGTTATGGCGGCGGACAGCCGAACAATAACTCACGGCCATATGGCG
GAGGAGGCTCTAGTCAGTCCCGCGGTCCGGCAGCGGATCCATTCTCTGACGACGGCAGACCGATCGATATATCTGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.07

100

0.567
  ssb Latilactobacillus sakei subsp. sakei 23K

49.412

100

0.512
  ssb Neisseria gonorrhoeae MS11

37.222

100

0.409
  ssb Neisseria meningitidis MC58

36.667

100

0.402
  ssb Glaesserella parasuis strain SC1401

33.702

100

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366

Multiple sequence alignment