Detailed information NTG0915123

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: U6038_RS08020
• Genome accession: NZ_CP140715
• Coordinates: 1683528..1684721 (-)
• Length: 397 a.a.
• NCBI ID: WP_205668064.1
• Uniprot ID: -
• Organism: Acinetobacter johnsonii strain FAHZZU3110hy
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1678528..1689721

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
U6038_RS08005 (U6038_08005)	-	1680565..1681593 (+)	1029	WP_333656655.1	AraC family transcriptional regulator	-
U6038_RS08010 (U6038_08010)	gcvH	1681665..1682039 (+)	375	WP_004693240.1	glycine cleavage system protein GcvH	-
U6038_RS08015 (U6038_08015)	-	1682300..1683480 (+)	1181	Protein_1541	MFS transporter	-
U6038_RS08020 (U6038_08020)	pilU	1683528..1684721 (-)	1194	WP_205668064.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
U6038_RS08025 (U6038_08025)	-	1684959..1686020 (-)	1062	WP_333652037.1	3-deoxy-7-phosphoheptulonate synthase	-
U6038_RS17035	-	1685999..1686112 (+)	114	WP_157843581.1	hypothetical protein	-
U6038_RS08030 (U6038_08030)	-	1686511..1688610 (-)	2100	WP_333652040.1	putative bifunctional diguanylate cyclase/phosphodiesterase	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 44692.04 Da
• Isoelectric Point: 6.3919

>NTDB_id=915123 U6038_RS08020 WP_205668064.1 1683528..1684721(-) (pilU) [Acinetobacter johnsonii strain FAHZZU3110hy]
MYSAELLEEARRMMFHMLSKVVEYGGSDLFISADFPPSIKHQGLMKPLGQQNLPSDQTKLFAYSLMNEKQRLEFETELEC
NFAISVPNVSRFRVNVFQQQLHVGMVIRTITAEIPSFTKLQLPTSLKDVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHREVGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPDERRNQLLMDLSSNMKAIISQRLVRTEDGRGRRAAVEIMLNTPLMSDLILKGNFHELKEVMSKS
RELGMQTFDQALFDLYNQGAIAYEEALRNADSVNELRLQIKLKSSRANPQLNSNSALSFDQAVAEKAKDAEEEKDDA

Nucleotide

• Length: 1194 bp

>NTDB_id=915123 U6038_RS08020 WP_205668064.1 1683528..1684721(-) (pilU) [Acinetobacter johnsonii strain FAHZZU3110hy]
ATGTATTCTGCAGAACTTTTAGAAGAAGCCCGTCGGATGATGTTTCACATGCTCAGCAAAGTGGTTGAGTATGGTGGTTC
AGACTTATTTATATCTGCAGACTTTCCGCCAAGTATTAAGCATCAGGGCCTTATGAAGCCATTGGGTCAACAAAATTTGC
CATCTGATCAGACCAAACTCTTTGCTTATAGTTTAATGAACGAAAAGCAACGATTGGAGTTCGAAACCGAGCTTGAGTGT
AATTTTGCAATTAGCGTTCCCAATGTTTCGCGTTTTCGTGTCAATGTTTTTCAGCAGCAACTACATGTAGGTATGGTGAT
TCGTACGATTACAGCGGAAATTCCCAGCTTCACTAAGTTACAACTTCCAACGTCTTTAAAAGACGTAATTATGGAAAAAC
GTGGTTTGGTCCTCGTTGTCGGTGGTACAGGGTCGGGTAAATCGACGTCTTTAGCAGCCATGATTGATCATCGAAATGAA
AACTCGGCAGGGCACATTATTACGGTTGAAGACCCTGTGGAGTATGTACACAAGCATAAAAAATCGATGATTACTCATCG
GGAAGTGGGTGTGGACTGTCATTCTTGGCACAATGCTTTGAAAAATACTCTGCGTCAAGCGCCCGATGTCATTTTAATTG
GTGAGATTCGTGACACGGAGACTATGGAGCATGCCATAGCTTTTGCGGAAACAGGTCACTTATGCCTAGGCACATTACAT
GCTAATAATGCAAATCAGGCTTTAGATCGAATTATTAACTTTTTCCCAGACGAACGTCGCAATCAACTTTTGATGGACTT
ATCTTCCAATATGAAGGCGATTATTTCACAGCGTCTGGTGCGAACTGAAGATGGGCGTGGTCGCCGAGCAGCAGTGGAAA
TCATGCTCAATACGCCGTTGATGTCAGACTTGATACTTAAAGGGAATTTCCATGAACTCAAAGAAGTGATGTCGAAGTCA
CGAGAGCTAGGTATGCAGACCTTTGATCAGGCTTTGTTTGATTTATACAATCAAGGTGCAATTGCTTACGAAGAAGCGCT
ACGAAATGCAGACTCGGTCAATGAATTGCGTCTACAGATTAAATTAAAGAGTAGTCGTGCCAACCCGCAGTTAAACTCAA
ATAGTGCTTTGTCTTTTGATCAAGCGGTTGCTGAAAAAGCCAAAGACGCTGAAGAAGAGAAAGACGACGCTTAA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (122-282)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	59.331	90.428	0.537
pilU	Acinetobacter baylyi ADP1	55.096	91.436	0.504
pilU	Vibrio cholerae strain A1552	50.578	87.154	0.441
pilT	Legionella pneumophila strain Lp02	42.773	85.39	0.365
pilT	Legionella pneumophila strain ERS1305867	42.773	85.39	0.365
pilT	Acinetobacter baylyi ADP1	43.598	82.62	0.36