Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   SO574_RS04150 Genome accession   NZ_CP140102
Coordinates   882843..883157 (+) Length   104 a.a.
NCBI ID   WP_322803795.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain VA-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 877843..888157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SO574_RS04140 (SO574_04140) - 880286..880558 (+) 273 WP_128811310.1 HU family DNA-binding protein -
  SO574_RS04145 (SO574_04145) ppiD 880794..882653 (+) 1860 WP_322803794.1 peptidylprolyl isomerase -
  SO574_RS04150 (SO574_04150) comEA 882843..883157 (+) 315 WP_322803795.1 helix-hairpin-helix domain-containing protein Machinery gene
  SO574_RS04155 (SO574_04155) rrtA 883297..883848 (-) 552 WP_322803796.1 rhombosortase -
  SO574_RS04160 (SO574_04160) - 883852..884469 (+) 618 WP_211919764.1 tRNA-uridine aminocarboxypropyltransferase -
  SO574_RS04165 (SO574_04165) - 884565..885887 (-) 1323 WP_322803797.1 anti-phage deoxyguanosine triphosphatase -
  SO574_RS04170 (SO574_04170) yfbR 885903..886487 (-) 585 WP_211919762.1 5'-deoxynucleotidase -
  SO574_RS04175 (SO574_04175) - 886601..887815 (-) 1215 WP_128811305.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11237.79 Da        Isoelectric Point: 5.8294

>NTDB_id=912510 SO574_RS04150 WP_322803795.1 882843..883157(+) (comEA) [Vibrio alfacsensis strain VA-1]
MKWILTISLMLLSSLAWATDSQTSSIEASSNKAAKYDGIEITVNVNTASAQEIASLLNGIGEKKAQDIVDYRKEHGPFKT
AADLTNVKGIGDATVKKNEDRILL

Nucleotide


Download         Length: 315 bp        

>NTDB_id=912510 SO574_RS04150 WP_322803795.1 882843..883157(+) (comEA) [Vibrio alfacsensis strain VA-1]
ATGAAATGGATTTTAACAATAAGCTTAATGCTGTTGAGCTCGTTAGCTTGGGCCACAGATAGCCAAACAAGCAGTATTGA
GGCATCAAGCAATAAAGCGGCAAAGTATGATGGCATTGAAATCACGGTGAACGTGAATACCGCTTCTGCACAAGAAATTG
CGAGTTTGCTTAACGGTATCGGTGAAAAGAAAGCACAAGATATCGTTGATTACCGCAAGGAGCATGGGCCATTTAAAACG
GCCGCAGATTTGACGAACGTAAAAGGTATTGGCGATGCCACCGTGAAGAAAAATGAGGACCGAATCCTACTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio parahaemolyticus RIMD 2210633

69.231

100

0.692
  comEA Vibrio campbellii strain DS40M4

68.269

100

0.683
  comEA Vibrio cholerae C6706

56.383

90.385

0.51
  comEA Vibrio cholerae strain A1552

56.383

90.385

0.51
  comEA/comE1 Glaesserella parasuis strain SC1401

38.318

100

0.394
  comEA Lactococcus lactis subsp. cremoris KW2

45.238

80.769

0.365