Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   U2P90_RS17785 Genome accession   NZ_CP140098
Coordinates   3642985..3645144 (+) Length   719 a.a.
NCBI ID   WP_322473178.1    Uniprot ID   -
Organism   Deinococcus sp. AB2017081     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3637985..3650144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U2P90_RS17755 (U2P90_17755) - 3638195..3639136 (-) 942 WP_322473173.1 carbohydrate ABC transporter permease -
  U2P90_RS17760 (U2P90_17760) - 3639292..3640575 (-) 1284 WP_322473174.1 ABC transporter substrate-binding protein -
  U2P90_RS17765 (U2P90_17765) - 3640662..3641339 (-) 678 WP_322473175.1 glycerophosphodiester phosphodiesterase -
  U2P90_RS17770 (U2P90_17770) - 3641412..3642254 (+) 843 WP_322473176.1 MerR family transcriptional regulator -
  U2P90_RS17775 (U2P90_17775) - 3642285..3642446 (-) 162 WP_295820750.1 hypothetical protein -
  U2P90_RS17780 (U2P90_17780) comEA 3642563..3642952 (+) 390 WP_322473177.1 ComEA family DNA-binding protein Machinery gene
  U2P90_RS17785 (U2P90_17785) comEC 3642985..3645144 (+) 2160 WP_322473178.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  U2P90_RS17790 (U2P90_17790) - 3645145..3645504 (-) 360 WP_322473179.1 hypothetical protein -
  U2P90_RS17795 (U2P90_17795) - 3645568..3646569 (-) 1002 WP_322473180.1 Gfo/Idh/MocA family protein -
  U2P90_RS17800 (U2P90_17800) - 3646720..3647844 (-) 1125 WP_322473181.1 methyltransferase domain-containing protein -
  U2P90_RS17805 (U2P90_17805) - 3647899..3649323 (+) 1425 WP_322473182.1 TrkH family potassium uptake protein -
  U2P90_RS17810 (U2P90_17810) - 3649370..3650029 (+) 660 WP_295818989.1 potassium channel family protein -

Sequence

Protein


Download         Length: 719 a.a.        Molecular weight: 74888.60 Da        Isoelectric Point: 10.0616

>NTDB_id=912503 U2P90_RS17785 WP_322473178.1 3642985..3645144(+) (comEC) [Deinococcus sp. AB2017081]
MAWPIPTVLGVIGGILLSLGVWWGGVALLGGALLALSDVRPLLAVLALAGGAAGFGSARLVSARPDVLRPWLGAQVTLEG
EWDGQFLTLREPRARVVLAPKPAVRPGHLRVSGRLVAPDSRRTPGGFDQAAWLRAQGGVFLPTPTAVLVAARVRSSTREG
GLRGWFRHGLTAGLPPRQAALMQAIELGDRNDIGREDFEEGYAVRDAFARSGLAHLMALSGQNVALITGVLVWLIGRVGW
PPGVRYGVPAFLLIFYLLLVGLSPSITRAVIMGFVVLVALAIGRGKVDPYGLTALAALVCLLLFPLWLLDIGFQLSFLAV
LGLTLAGRAADRLPAALPYWLRTAVAATVLAELATLPVIAGTFGQLPLVGLPANLLAAPVMAVLVPTGFLAGLLGPLAAP
LNLLNRVLADALLGIAWAAGQFPVLPWGTVSPAGVIAYAVCAGAGVLWLRGRVRAPAVLGTVLACALLTALPGRLHPPRD
LVFLDVGQGDSTLLRVPGLTMLVDAGGSVNSDYDVGGRTVVPALRALGVRKLDVVVATHADTDHIEGLTSVLRSLPVGEL
WIGHRKAGDPVLDAVLAAAQERHVPVREVTRGDRISAAGLSVTVLWPPGNVWSTADNDNSVAVKVESGAWSTALLGDLAD
PAESMIGVGNLDVLKAAHHGSRFSTGAALLAQATPQHAVISVGRNTYGHPNADVLGRLQAAGTKVWRTDEVGTITWPVP

Nucleotide


Download         Length: 2160 bp        

>NTDB_id=912503 U2P90_RS17785 WP_322473178.1 3642985..3645144(+) (comEC) [Deinococcus sp. AB2017081]
GTGGCGTGGCCGATCCCCACCGTGCTGGGCGTGATCGGCGGCATTCTGCTGTCGCTGGGCGTGTGGTGGGGCGGGGTGGC
CCTGCTGGGCGGGGCGCTGCTGGCCCTGTCCGATGTCCGGCCGCTGCTGGCCGTGCTGGCCCTGGCCGGCGGCGCGGCCG
GGTTCGGTTCGGCGCGGCTGGTCAGCGCCCGCCCCGACGTCCTGCGCCCGTGGCTGGGCGCCCAGGTCACGCTGGAGGGC
GAGTGGGACGGCCAGTTCCTGACGCTGCGGGAGCCGCGTGCCCGCGTGGTGCTGGCCCCGAAACCGGCCGTGCGGCCCGG
GCACCTGCGCGTGAGCGGGCGCCTGGTCGCTCCGGACAGCCGGCGCACCCCTGGCGGCTTCGACCAGGCCGCGTGGCTGC
GTGCCCAGGGCGGCGTGTTCCTGCCCACCCCGACGGCCGTACTGGTGGCAGCCCGCGTGCGCTCCAGCACACGCGAGGGC
GGCCTGCGCGGGTGGTTCCGCCACGGCCTGACCGCCGGCCTGCCCCCGCGCCAGGCGGCCCTGATGCAGGCCATCGAACT
CGGTGACCGCAACGACATCGGCCGCGAGGACTTCGAGGAGGGCTACGCCGTGCGGGACGCCTTCGCCCGCTCGGGCCTCG
CGCACCTGATGGCGCTGTCGGGGCAGAACGTCGCCCTGATCACGGGCGTGCTCGTGTGGCTGATCGGCCGCGTGGGCTGG
CCGCCGGGCGTGCGCTACGGCGTACCGGCGTTCCTGCTGATCTTCTACCTGTTGCTGGTGGGCCTGTCGCCGAGCATCAC
CCGCGCCGTGATCATGGGCTTCGTGGTGCTGGTGGCACTGGCGATCGGGCGCGGCAAGGTCGACCCCTACGGCCTGACCG
CGCTGGCCGCCCTGGTGTGCCTGCTGCTGTTCCCGCTGTGGCTGCTGGACATCGGCTTCCAGCTGTCGTTCCTGGCCGTG
CTGGGCCTGACCCTGGCCGGACGCGCCGCCGACCGCCTGCCCGCCGCGCTGCCGTACTGGCTGCGGACGGCGGTCGCCGC
GACCGTCCTGGCCGAGCTTGCCACGCTGCCGGTCATCGCGGGCACCTTCGGGCAGCTGCCGCTGGTGGGCCTGCCGGCGA
ACCTGCTGGCCGCGCCGGTCATGGCCGTGCTGGTGCCCACCGGCTTCCTGGCAGGACTGCTGGGGCCGCTGGCCGCACCG
CTGAACCTCCTGAACCGCGTGCTGGCCGACGCCCTGCTGGGGATCGCGTGGGCCGCCGGGCAGTTCCCGGTGCTCCCGTG
GGGCACGGTCTCCCCGGCCGGCGTGATCGCCTACGCCGTGTGCGCCGGAGCCGGCGTGCTGTGGCTGCGGGGCCGCGTCC
GGGCACCCGCCGTTCTGGGCACCGTGCTCGCGTGTGCGCTCCTGACCGCGCTGCCCGGCCGCCTGCACCCCCCGCGCGAT
CTGGTCTTTCTGGACGTGGGCCAGGGCGACAGCACCCTGCTGCGCGTGCCCGGCCTGACCATGCTGGTCGATGCCGGCGG
CTCCGTGAACAGCGACTACGACGTCGGGGGCCGCACGGTCGTTCCGGCCCTGCGGGCCCTGGGCGTGCGGAAGCTGGACG
TTGTTGTGGCCACCCATGCCGATACCGACCACATCGAGGGGCTGACGAGTGTCCTGCGTTCGTTGCCCGTCGGGGAGCTA
TGGATCGGGCACCGAAAGGCGGGCGACCCGGTGCTGGACGCCGTGCTGGCTGCCGCCCAGGAACGCCACGTGCCCGTGCG
CGAGGTCACGCGCGGCGACCGGATCAGCGCCGCCGGGCTCAGCGTGACCGTCCTGTGGCCACCGGGGAATGTGTGGTCGA
CCGCCGACAACGACAACTCGGTGGCCGTGAAGGTCGAGTCCGGAGCGTGGAGCACCGCCCTGCTGGGAGATCTGGCCGAC
CCCGCCGAATCCATGATCGGCGTGGGGAACCTTGACGTGCTCAAGGCCGCGCACCACGGCAGCCGCTTCAGCACCGGGGC
GGCCCTGCTGGCCCAGGCCACGCCGCAGCACGCCGTCATCAGCGTGGGCCGCAACACCTATGGCCACCCCAACGCCGACG
TGCTGGGCAGGCTTCAGGCGGCAGGCACGAAGGTCTGGCGCACGGATGAGGTGGGGACGATCACGTGGCCTGTACCGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-450)

Beta-lactamase superfamily domain (Lactamase_B_2)

(502-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

68.006

100

0.683